3H9E

Crystal structure of human sperm-specific glyceraldehyde-3-phosphate dehydrogenase (GAPDS) complex with NAD and phosphate

Functional Information from GO Data

Chain	GOid	namespace	contents
O	0006006	biological_process	glucose metabolic process
O	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
O	0050661	molecular_function	NADP binding
O	0051287	molecular_function	NAD binding
P	0006006	biological_process	glucose metabolic process
P	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
P	0050661	molecular_function	NADP binding
P	0051287	molecular_function	NAD binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	36
Details	BINDING SITE FOR RESIDUE NAD O 2

Chain	Residue
O	HOH27
O	ASP106
O	PRO107
O	PHE108
O	LYS151
O	SER169
O	THR170
O	GLY171
O	TYR173
O	SER193
O	ALA194
O	HOH32
O	ALA255
O	ASN388
O	TYR392
O	PO4415
O	HOH424
O	HOH439
O	HOH448
O	HOH456
O	HOH459
O	HOH465
O	HOH56
O	HOH472
O	HOH559
O	HOH563
O	HOH569
O	HOH571
O	HOH579
O	HOH602
O	ASN81
O	GLY82
O	PHE83
O	GLY84
O	ARG85
O	ILE86

---

site_id	AC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PO4 O 415

Chain	Residue
O	NAD2
O	THR254
O	THR256
O	ARG306
O	HOH424
O	HOH455
O	HOH468
O	HOH492
O	HOH532
O	HOH559
O	HOH595

---

site_id	AC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PO4 O 4

Chain	Residue
O	HOH37
O	SER223
O	CYS224
O	THR225
O	HIS251
O	THR283
O	GLY284
O	HOH424
O	HOH455
O	HOH564
O	HOH595

---

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO O 8

Chain	Residue
O	ALA267
O	TRP268
O	HOH527

---

site_id	AC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO O 9

Chain	Residue
O	PRO200
O	MET201
O	ASN207
O	LYS291
O	HOH577

---

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EDO O 14

Chain	Residue
O	GLU244
O	ARG320
O	HOH600
P	ARG320
P	ASN376
P	ASN378
P	HOH618

---

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO O 15

Chain	Residue
O	GLY205
O	ASN207
O	GLU208
O	ASN209
O	HOH567

---

site_id	AC8
Number of Residues	1
Details	BINDING SITE FOR RESIDUE EDO O 17

Chain	Residue
O	LYS331

---

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO O 18

Chain	Residue
O	ARG269
P	GLU352
P	LYS370
P	HOH502

---

site_id	BC1
Number of Residues	36
Details	BINDING SITE FOR RESIDUE NAD P 1

Chain	Residue
P	THR170
P	GLY171
P	TYR173
P	SER193
P	ALA194
P	ALA255
P	PRO263
P	ASN388
P	TYR392
P	PO4415
P	HOH489
P	HOH511
P	HOH531
P	HOH545
P	HOH549
P	HOH586
P	HOH596
P	HOH607
P	HOH608
P	HOH609
P	HOH19
P	HOH28
P	HOH55
P	HOH60
P	HOH62
P	ASN81
P	GLY82
P	PHE83
P	GLY84
P	ARG85
P	ILE86
P	ASP106
P	PRO107
P	PHE108
P	LYS151
P	SER169

---

site_id	BC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PO4 P 415

Chain	Residue
P	NAD1
P	HOH60
P	THR254
P	THR256
P	ARG306
P	HOH434
P	HOH436
P	HOH510
P	HOH549
P	HOH581
P	HOH622

---

site_id	BC3
Number of Residues	12
Details	BINDING SITE FOR RESIDUE PO4 P 3

Chain	Residue
P	SER223
P	CYS224
P	THR225
P	HIS251
P	THR283
P	GLY284
P	ARG306
P	HOH436
P	HOH495
P	HOH549
P	HOH614
P	HOH622

---

site_id	BC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO P 5

Chain	Residue
O	ARG126
O	HOH506
P	PHE358
P	ASP361

---

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO P 6

Chain	Residue
P	ALA267
P	TRP268
P	HOH620

---

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO P 7

Chain	Residue
P	PRO200
P	MET201
P	ASN207
P	HOH593
P	HOH625

---

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO P 10

Chain	Residue
P	VAL206
P	ASN207
P	GLU208
P	ASN209

---

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO P 11

Chain	Residue
O	PHE358
O	ASP361
P	ARG126
P	HOH494

---

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO P 12

Chain	Residue
P	EDO13
P	ALA369
P	GLY372
P	HOH616

---

site_id	CC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO P 13

Chain	Residue
P	EDO12
P	LYS331
P	LYS370

---

site_id	CC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EDO P 16

Chain	Residue
P	PRO197
P	LYS291
P	PRO324
P	PRO326
P	ASP377
P	HOH593

---

Functional Information from PROSITE/UniProt

site_id	PS00071
Number of Residues	8
Details	GAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL

Chain	Residue	Details
O	ALA222-LEU229

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	ACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU10009, ECO:0000269|PubMed:21269272

Chain	Residue	Details
O	CYS224
P	CYS224

---

site_id	SWS_FT_FI2
Number of Residues	12
Details	BINDING: BINDING => ECO:0000269|PubMed:21269272

Chain	Residue	Details
O	ARG85
P	TYR173
P	SER193
P	ASN388
O	ASP106
O	LYS151
O	TYR173
O	SER193
O	ASN388
P	ARG85
P	ASP106
P	LYS151

---

site_id	SWS_FT_FI3
Number of Residues	8
Details	BINDING: BINDING => ECO:0000250

Chain	Residue	Details
O	SER223
O	THR254
O	THR283
O	ARG306
P	SER223
P	THR254
P	THR283
P	ARG306

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	SITE: Activates thiol group during catalysis

Chain	Residue	Details
O	HIS251
P	HIS251

---

Catalytic Information from CSA

site_id	CSA1
Number of Residues	2
Details	Annotated By Reference To The Literature 1szj

Chain	Residue	Details
A	CYS224
A	HIS251

---

site_id	CSA2
Number of Residues	2
Details	Annotated By Reference To The Literature 1szj

Chain	Residue	Details
B	CYS224
B	HIS251

---