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3GV5

Human DNA polymerase iota in complex with T template DNA and incoming ddADP

Functional Information from GO Data
ChainGOidnamespacecontents
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
D0003684molecular_functiondamaged DNA binding
D0003887molecular_functionDNA-directed DNA polymerase activity
D0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 421
ChainResidue
BSER296
BGLN300
BHOH647
DGLN144
DHOH505
DHOH527
THOH157

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 422
ChainResidue
BGLU305
BASP306
BLEU324
BHOH479
BHOH750
TDC841
TDT842
BGLU97
BGLU304

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 423
ChainResidue
BLYS237
BHOH546
BHOH712
PHOH312
PHOH648

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 424
ChainResidue
BASP34
BLEU35
BASP126
BADI425
PHOH279

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ADI B 425
ChainResidue
BASP34
BLEU35
BASP36
BCYS37
BPHE38
BVAL64
BTHR65
BTYR68
BARG71
BLYS77
BASP126
BLYS214
BCA424
BHOH572
BHOH579
BHOH637
PHOH754
PDG873
TDT840

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA P 1
ChainResidue
BHOH523
PHOH751
PHOH754
PDA872
THOH757

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 421
ChainResidue
DASP34
DLEU35
DASP126
DCA422
DADI424
DHOH638

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 422
ChainResidue
DASP34
DGLU127
DCA421
DHOH436
DHOH638
EDG873

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA D 423
ChainResidue
BSER296
BGLN300
BHOH647
DGLN144
DHOH505
DHOH527
THOH157

site_idBC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADI D 424
ChainResidue
DASP34
DLEU35
DASP36
DCYS37
DPHE38
DVAL64
DTHR65
DTYR68
DARG71
DLYS77
DASP126
DLYS214
DCA421
DHOH436
DHOH480
DHOH507
DHOH649
EHOH752
EDG873
FDT840

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA F 1
ChainResidue
DGLU304
DHOH525
DHOH565
FHOH150
FDT842

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00216
ChainResidueDetails
BTHR152
DTHR152

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:27555320, ECO:0007744|PDB:5KT5
ChainResidueDetails
BGLN59
BLYS60
BVAL151
DGLN59
DLYS60
DVAL151

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15254543, ECO:0007744|PDB:1T3N
ChainResidueDetails
BVAL64
BGLY96
DVAL64
DGLY96

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PDB entries from 2024-07-24

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