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3GS6

Vibrio Cholerea family 3 glycoside hydrolase (NagZ)in complex with N-butyryl-PUGNAc

Functional Information from GO Data
ChainGOidnamespacecontents
A0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
A0004563molecular_functionbeta-N-acetylhexosaminidase activity
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0008360biological_processregulation of cell shape
A0009252biological_processpeptidoglycan biosynthetic process
A0009254biological_processpeptidoglycan turnover
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0046677biological_processresponse to antibiotic
A0051301biological_processcell division
A0071555biological_processcell wall organization
A0102148molecular_functionN-acetyl-beta-D-galactosaminidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE NP6 A 341
ChainResidue
AALA19
AMET246
AHOH436
AHOH442
AHOH470
AALA22
AILE30
AASP62
AARG130
ALYS160
AHIS161
AHIS165
AMET204

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 342
ChainResidue
AVAL153
AGLN301
APHE303
AHOH488

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 343
ChainResidue
AASP7
AVAL8
AARG34
AASN274
ALYS275
AARG276
AILE288
AHOH367

Functional Information from PROSITE/UniProt
site_idPS00775
Number of Residues18
DetailsGLYCOSYL_HYDROL_F3 Glycosyl hydrolases family 3 active site. VLReElgfkGIVFSDdlS
ChainResidueDetails
AVAL228-SER245

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00364
ChainResidueDetails
AHIS173

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Nucleophile
ChainResidueDetails
AASP242

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING:
ChainResidueDetails
AASP62
AARG130
ALYS160

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00364
ChainResidueDetails
AARG70

site_idSWS_FT_FI5
Number of Residues1
DetailsSITE: Important for catalytic activity => ECO:0000255|HAMAP-Rule:MF_00364
ChainResidueDetails
AASP171

219869

PDB entries from 2024-05-15

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