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3GRU

Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0016433molecular_functionrRNA (adenine) methyltransferase activity
A0016740molecular_functiontransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AMP A 300
ChainResidue
AGLN10
AHOH353
AHOH354
AHOH454
AHOH494
AHOH511
AHOH597
AGLU59
AILE60
AASP61
AGLY83
AASP84
AALA85
APRO103
ATYR104

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 276
ChainResidue
ALYS132
ASO4277
AHOH404
AHOH492
AHOH523

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 277
ChainResidue
ATYR128
ALYS161
ASO4276
AHOH352

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 278
ChainResidue
AASN183
ALYS184
AGLY185
ALYS212
AHOH430

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 279
ChainResidue
ALYS53
AARG145
AHOH417

Functional Information from PROSITE/UniProt
site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLEiGLGkGiLTeelAknakk...VyVIEiD
ChainResidueDetails
AVAL34-ASP61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ALEU13
AGLU59
AASP84
AASN101

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00607
ChainResidueDetails
AGLY38

221051

PDB entries from 2024-06-12

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