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3GPL

Crystal structure of the ternary complex of RecD2 with DNA and ADPNP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0016887molecular_functionATP hydrolysis activity
A0032508biological_processDNA duplex unwinding
A0043139molecular_function5'-3' DNA helicase activity
B0003677molecular_functionDNA binding
B0016887molecular_functionATP hydrolysis activity
B0032508biological_processDNA duplex unwinding
B0043139molecular_function5'-3' DNA helicase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 800
ChainResidue
AHOH136
ASER367
AHOH739
AHOH740
AANP801

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ANP A 801
ChainResidue
AGLN343
AGLY361
APRO362
AGLY363
ATHR364
AGLY365
ALYS366
ASER367
ATHR368
AGLN466
ATYR492
AARG493
AGLU652
AARG679
AHOH739
AHOH740
AHOH742
AMG800
AHOH11
AHOH12
AHOH136
AGLY338

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 800
ChainResidue
BHOH88
BSER367
BHOH725
BHOH726
BANP801

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ANP B 801
ChainResidue
BHOH88
BGLY338
BGLN343
BPRO362
BGLY363
BTHR364
BGLY365
BLYS366
BSER367
BTHR368
BGLN466
BTYR492
BARG493
BGLU652
BARG679
BHOH725
BMG800

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsDNA_BIND:
ChainResidueDetails
AGLY391
BARG554-LYS555
BASN596-ASN604
BTHR644-ARG647
ATHR407-TYR414
AVAL470
AARG554-LYS555
AASN596-ASN604
ATHR644-ARG647
BGLY391
BTHR407-TYR414
BVAL470

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:19490894
ChainResidueDetails
AGLN343
AGLN466
AARG493
AARG679
BGLN343
BGLN466
BARG493
BARG679

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01488, ECO:0000269|PubMed:19490894
ChainResidueDetails
AGLY363
BGLY363

218853

PDB entries from 2024-04-24

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