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3GLY

REFINED CRYSTAL STRUCTURES OF GLUCOAMYLASE FROM ASPERGILLUS AWAMORI VAR. X100

Replaces:  1GLY
Functional Information from GO Data
ChainGOidnamespacecontents
A0004339molecular_functionglucan 1,4-alpha-glucosidase activity
A0005975biological_processcarbohydrate metabolic process
A0005976biological_processpolysaccharide metabolic process
Functional Information from PDB Data
site_idACT
Number of Residues4
DetailsACTIVE SITE: RESIDUES THAT BIND ACARBOSE AND 1-DEOXYNOJIRIMYCIN AT SUBSITE 1 OF THE ACTIVE SITE ARE OD1 ASP 55, OD2 ASP 55, NH1 ARG 305, CARBONYL 177, NE ARG 54, AND NH2 ARG 54. GLU 179 IS THE CATALYTIC ACID AND RESIDUE GLU 400 IS THE CATALYTIC BASE. WATER 500 IS THE NUCLEOPHILE.
ChainResidue
AASP55
AARG305
ALEU177
AARG54

Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DKSDGDELSarDL
ChainResidueDetails
AASP403-LEU415

site_idPS00820
Number of Residues11
DetailsGLUCOAMYLASE Glucoamylase active site region signature. TGy.DlWEEvnG
ChainResidueDetails
ATHR173-GLY183

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10051","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1970434","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10051","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1970434","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","featureId":"CAR_000112"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","featureId":"CAR_000113"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues3
DetailsGlycosylation: {"description":"O-linked (Man) serine","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues5
DetailsGlycosylation: {"description":"O-linked (Man) serine"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues3
DetailsGlycosylation: {"description":"O-linked (Man) threonine"}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1agm
ChainResidueDetails
AGLU179
AGLU400

site_idMCSA1
Number of Residues5
DetailsM-CSA 393
ChainResidueDetails
ATRP120transition state stabiliser
AASP176proton shuttle (general acid/base), transition state stabiliser
AGLU179proton shuttle (general acid/base)
AGLU180activator
AGLU400activator

246704

PDB entries from 2025-12-24

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