Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3GHG

Crystal Structure of Human Fibrinogen

Functional Information from GO Data
ChainGOidnamespacecontents
A0005102molecular_functionsignaling receptor binding
A0005577cellular_componentfibrinogen complex
A0007596biological_processblood coagulation
A0030168biological_processplatelet activation
A0051258biological_processprotein polymerization
B0002250biological_processadaptive immune response
B0005102molecular_functionsignaling receptor binding
B0005198molecular_functionstructural molecule activity
B0005201molecular_functionextracellular matrix structural constituent
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005577cellular_componentfibrinogen complex
B0005615cellular_componentextracellular space
B0005783cellular_componentendoplasmic reticulum
B0005886cellular_componentplasma membrane
B0005938cellular_componentcell cortex
B0007160biological_processcell-matrix adhesion
B0007596biological_processblood coagulation
B0009897cellular_componentexternal side of plasma membrane
B0009986cellular_componentcell surface
B0030168biological_processplatelet activation
B0031091cellular_componentplatelet alpha granule
B0031093cellular_componentplatelet alpha granule lumen
B0031639biological_processplasminogen activation
B0034116biological_processpositive regulation of heterotypic cell-cell adhesion
B0042730biological_processfibrinolysis
B0043152biological_processinduction of bacterial agglutination
B0044320biological_processcellular response to leptin stimulus
B0045087biological_processinnate immune response
B0045202cellular_componentsynapse
B0045907biological_processpositive regulation of vasoconstriction
B0045921biological_processpositive regulation of exocytosis
B0050714biological_processpositive regulation of protein secretion
B0050839molecular_functioncell adhesion molecule binding
B0051087molecular_functionprotein-folding chaperone binding
B0051258biological_processprotein polymerization
B0051592biological_processresponse to calcium ion
B0062023cellular_componentcollagen-containing extracellular matrix
B0065003biological_processprotein-containing complex assembly
B0070062cellular_componentextracellular exosome
B0070374biological_processpositive regulation of ERK1 and ERK2 cascade
B0070527biological_processplatelet aggregation
B0071347biological_processcellular response to interleukin-1
B0072378biological_processblood coagulation, fibrin clot formation
B0072562cellular_componentblood microparticle
B0090277biological_processpositive regulation of peptide hormone secretion
B1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
B1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
B1903561cellular_componentextracellular vesicle
B2000352biological_processnegative regulation of endothelial cell apoptotic process
C0005102molecular_functionsignaling receptor binding
C0005198molecular_functionstructural molecule activity
C0005201molecular_functionextracellular matrix structural constituent
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005577cellular_componentfibrinogen complex
C0005615cellular_componentextracellular space
C0005788cellular_componentendoplasmic reticulum lumen
C0005886cellular_componentplasma membrane
C0007160biological_processcell-matrix adhesion
C0007596biological_processblood coagulation
C0009306biological_processprotein secretion
C0009897cellular_componentexternal side of plasma membrane
C0009986cellular_componentcell surface
C0030168biological_processplatelet activation
C0031091cellular_componentplatelet alpha granule
C0031093cellular_componentplatelet alpha granule lumen
C0031639biological_processplasminogen activation
C0034116biological_processpositive regulation of heterotypic cell-cell adhesion
C0036345biological_processplatelet maturation
C0042730biological_processfibrinolysis
C0042802molecular_functionidentical protein binding
C0045907biological_processpositive regulation of vasoconstriction
C0045921biological_processpositive regulation of exocytosis
C0046872molecular_functionmetal ion binding
C0050714biological_processpositive regulation of protein secretion
C0050839molecular_functioncell adhesion molecule binding
C0051258biological_processprotein polymerization
C0051592biological_processresponse to calcium ion
C0062023cellular_componentcollagen-containing extracellular matrix
C0065003biological_processprotein-containing complex assembly
C0070062cellular_componentextracellular exosome
C0070374biological_processpositive regulation of ERK1 and ERK2 cascade
C0070527biological_processplatelet aggregation
C0071347biological_processcellular response to interleukin-1
C0071354biological_processcellular response to interleukin-6
C0072378biological_processblood coagulation, fibrin clot formation
C0072562cellular_componentblood microparticle
C0090277biological_processpositive regulation of peptide hormone secretion
C1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
C1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
C2000352biological_processnegative regulation of endothelial cell apoptotic process
D0005102molecular_functionsignaling receptor binding
D0005577cellular_componentfibrinogen complex
D0007596biological_processblood coagulation
D0030168biological_processplatelet activation
D0051258biological_processprotein polymerization
E0002250biological_processadaptive immune response
E0005102molecular_functionsignaling receptor binding
E0005198molecular_functionstructural molecule activity
E0005201molecular_functionextracellular matrix structural constituent
E0005515molecular_functionprotein binding
E0005576cellular_componentextracellular region
E0005577cellular_componentfibrinogen complex
E0005615cellular_componentextracellular space
E0005783cellular_componentendoplasmic reticulum
E0005886cellular_componentplasma membrane
E0005938cellular_componentcell cortex
E0007160biological_processcell-matrix adhesion
E0007596biological_processblood coagulation
E0009897cellular_componentexternal side of plasma membrane
E0009986cellular_componentcell surface
E0030168biological_processplatelet activation
E0031091cellular_componentplatelet alpha granule
E0031093cellular_componentplatelet alpha granule lumen
E0031639biological_processplasminogen activation
E0034116biological_processpositive regulation of heterotypic cell-cell adhesion
E0042730biological_processfibrinolysis
E0043152biological_processinduction of bacterial agglutination
E0044320biological_processcellular response to leptin stimulus
E0045087biological_processinnate immune response
E0045202cellular_componentsynapse
E0045907biological_processpositive regulation of vasoconstriction
E0045921biological_processpositive regulation of exocytosis
E0050714biological_processpositive regulation of protein secretion
E0050839molecular_functioncell adhesion molecule binding
E0051087molecular_functionprotein-folding chaperone binding
E0051258biological_processprotein polymerization
E0051592biological_processresponse to calcium ion
E0062023cellular_componentcollagen-containing extracellular matrix
E0065003biological_processprotein-containing complex assembly
E0070062cellular_componentextracellular exosome
E0070374biological_processpositive regulation of ERK1 and ERK2 cascade
E0070527biological_processplatelet aggregation
E0071347biological_processcellular response to interleukin-1
E0072378biological_processblood coagulation, fibrin clot formation
E0072562cellular_componentblood microparticle
E0090277biological_processpositive regulation of peptide hormone secretion
E1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
E1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
E1903561cellular_componentextracellular vesicle
E2000352biological_processnegative regulation of endothelial cell apoptotic process
F0005102molecular_functionsignaling receptor binding
F0005198molecular_functionstructural molecule activity
F0005201molecular_functionextracellular matrix structural constituent
F0005515molecular_functionprotein binding
F0005576cellular_componentextracellular region
F0005577cellular_componentfibrinogen complex
F0005615cellular_componentextracellular space
F0005788cellular_componentendoplasmic reticulum lumen
F0005886cellular_componentplasma membrane
F0007160biological_processcell-matrix adhesion
F0007596biological_processblood coagulation
F0009306biological_processprotein secretion
F0009897cellular_componentexternal side of plasma membrane
F0009986cellular_componentcell surface
F0030168biological_processplatelet activation
F0031091cellular_componentplatelet alpha granule
F0031093cellular_componentplatelet alpha granule lumen
F0031639biological_processplasminogen activation
F0034116biological_processpositive regulation of heterotypic cell-cell adhesion
F0036345biological_processplatelet maturation
F0042730biological_processfibrinolysis
F0042802molecular_functionidentical protein binding
F0045907biological_processpositive regulation of vasoconstriction
F0045921biological_processpositive regulation of exocytosis
F0046872molecular_functionmetal ion binding
F0050714biological_processpositive regulation of protein secretion
F0050839molecular_functioncell adhesion molecule binding
F0051258biological_processprotein polymerization
F0051592biological_processresponse to calcium ion
F0062023cellular_componentcollagen-containing extracellular matrix
F0065003biological_processprotein-containing complex assembly
F0070062cellular_componentextracellular exosome
F0070374biological_processpositive regulation of ERK1 and ERK2 cascade
F0070527biological_processplatelet aggregation
F0071347biological_processcellular response to interleukin-1
F0071354biological_processcellular response to interleukin-6
F0072378biological_processblood coagulation, fibrin clot formation
F0072562cellular_componentblood microparticle
F0090277biological_processpositive regulation of peptide hormone secretion
F1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
F1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
F2000352biological_processnegative regulation of endothelial cell apoptotic process
G0005102molecular_functionsignaling receptor binding
G0005577cellular_componentfibrinogen complex
G0007596biological_processblood coagulation
G0030168biological_processplatelet activation
G0051258biological_processprotein polymerization
H0002250biological_processadaptive immune response
H0005102molecular_functionsignaling receptor binding
H0005198molecular_functionstructural molecule activity
H0005201molecular_functionextracellular matrix structural constituent
H0005515molecular_functionprotein binding
H0005576cellular_componentextracellular region
H0005577cellular_componentfibrinogen complex
H0005615cellular_componentextracellular space
H0005783cellular_componentendoplasmic reticulum
H0005886cellular_componentplasma membrane
H0005938cellular_componentcell cortex
H0007160biological_processcell-matrix adhesion
H0007596biological_processblood coagulation
H0009897cellular_componentexternal side of plasma membrane
H0009986cellular_componentcell surface
H0030168biological_processplatelet activation
H0031091cellular_componentplatelet alpha granule
H0031093cellular_componentplatelet alpha granule lumen
H0031639biological_processplasminogen activation
H0034116biological_processpositive regulation of heterotypic cell-cell adhesion
H0042730biological_processfibrinolysis
H0043152biological_processinduction of bacterial agglutination
H0044320biological_processcellular response to leptin stimulus
H0045087biological_processinnate immune response
H0045202cellular_componentsynapse
H0045907biological_processpositive regulation of vasoconstriction
H0045921biological_processpositive regulation of exocytosis
H0050714biological_processpositive regulation of protein secretion
H0050839molecular_functioncell adhesion molecule binding
H0051087molecular_functionprotein-folding chaperone binding
H0051258biological_processprotein polymerization
H0051592biological_processresponse to calcium ion
H0062023cellular_componentcollagen-containing extracellular matrix
H0065003biological_processprotein-containing complex assembly
H0070062cellular_componentextracellular exosome
H0070374biological_processpositive regulation of ERK1 and ERK2 cascade
H0070527biological_processplatelet aggregation
H0071347biological_processcellular response to interleukin-1
H0072378biological_processblood coagulation, fibrin clot formation
H0072562cellular_componentblood microparticle
H0090277biological_processpositive regulation of peptide hormone secretion
H1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
H1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
H1903561cellular_componentextracellular vesicle
H2000352biological_processnegative regulation of endothelial cell apoptotic process
I0005102molecular_functionsignaling receptor binding
I0005198molecular_functionstructural molecule activity
I0005201molecular_functionextracellular matrix structural constituent
I0005515molecular_functionprotein binding
I0005576cellular_componentextracellular region
I0005577cellular_componentfibrinogen complex
I0005615cellular_componentextracellular space
I0005788cellular_componentendoplasmic reticulum lumen
I0005886cellular_componentplasma membrane
I0007160biological_processcell-matrix adhesion
I0007596biological_processblood coagulation
I0009306biological_processprotein secretion
I0009897cellular_componentexternal side of plasma membrane
I0009986cellular_componentcell surface
I0030168biological_processplatelet activation
I0031091cellular_componentplatelet alpha granule
I0031093cellular_componentplatelet alpha granule lumen
I0031639biological_processplasminogen activation
I0034116biological_processpositive regulation of heterotypic cell-cell adhesion
I0036345biological_processplatelet maturation
I0042730biological_processfibrinolysis
I0042802molecular_functionidentical protein binding
I0045907biological_processpositive regulation of vasoconstriction
I0045921biological_processpositive regulation of exocytosis
I0046872molecular_functionmetal ion binding
I0050714biological_processpositive regulation of protein secretion
I0050839molecular_functioncell adhesion molecule binding
I0051258biological_processprotein polymerization
I0051592biological_processresponse to calcium ion
I0062023cellular_componentcollagen-containing extracellular matrix
I0065003biological_processprotein-containing complex assembly
I0070062cellular_componentextracellular exosome
I0070374biological_processpositive regulation of ERK1 and ERK2 cascade
I0070527biological_processplatelet aggregation
I0071347biological_processcellular response to interleukin-1
I0071354biological_processcellular response to interleukin-6
I0072378biological_processblood coagulation, fibrin clot formation
I0072562cellular_componentblood microparticle
I0090277biological_processpositive regulation of peptide hormone secretion
I1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
I1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
I2000352biological_processnegative regulation of endothelial cell apoptotic process
J0005102molecular_functionsignaling receptor binding
J0005577cellular_componentfibrinogen complex
J0007596biological_processblood coagulation
J0030168biological_processplatelet activation
J0051258biological_processprotein polymerization
K0002250biological_processadaptive immune response
K0005102molecular_functionsignaling receptor binding
K0005198molecular_functionstructural molecule activity
K0005201molecular_functionextracellular matrix structural constituent
K0005515molecular_functionprotein binding
K0005576cellular_componentextracellular region
K0005577cellular_componentfibrinogen complex
K0005615cellular_componentextracellular space
K0005783cellular_componentendoplasmic reticulum
K0005886cellular_componentplasma membrane
K0005938cellular_componentcell cortex
K0007160biological_processcell-matrix adhesion
K0007596biological_processblood coagulation
K0009897cellular_componentexternal side of plasma membrane
K0009986cellular_componentcell surface
K0030168biological_processplatelet activation
K0031091cellular_componentplatelet alpha granule
K0031093cellular_componentplatelet alpha granule lumen
K0031639biological_processplasminogen activation
K0034116biological_processpositive regulation of heterotypic cell-cell adhesion
K0042730biological_processfibrinolysis
K0043152biological_processinduction of bacterial agglutination
K0044320biological_processcellular response to leptin stimulus
K0045087biological_processinnate immune response
K0045202cellular_componentsynapse
K0045907biological_processpositive regulation of vasoconstriction
K0045921biological_processpositive regulation of exocytosis
K0050714biological_processpositive regulation of protein secretion
K0050839molecular_functioncell adhesion molecule binding
K0051087molecular_functionprotein-folding chaperone binding
K0051258biological_processprotein polymerization
K0051592biological_processresponse to calcium ion
K0062023cellular_componentcollagen-containing extracellular matrix
K0065003biological_processprotein-containing complex assembly
K0070062cellular_componentextracellular exosome
K0070374biological_processpositive regulation of ERK1 and ERK2 cascade
K0070527biological_processplatelet aggregation
K0071347biological_processcellular response to interleukin-1
K0072378biological_processblood coagulation, fibrin clot formation
K0072562cellular_componentblood microparticle
K0090277biological_processpositive regulation of peptide hormone secretion
K1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
K1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
K1903561cellular_componentextracellular vesicle
K2000352biological_processnegative regulation of endothelial cell apoptotic process
L0005102molecular_functionsignaling receptor binding
L0005198molecular_functionstructural molecule activity
L0005201molecular_functionextracellular matrix structural constituent
L0005515molecular_functionprotein binding
L0005576cellular_componentextracellular region
L0005577cellular_componentfibrinogen complex
L0005615cellular_componentextracellular space
L0005788cellular_componentendoplasmic reticulum lumen
L0005886cellular_componentplasma membrane
L0007160biological_processcell-matrix adhesion
L0007596biological_processblood coagulation
L0009306biological_processprotein secretion
L0009897cellular_componentexternal side of plasma membrane
L0009986cellular_componentcell surface
L0030168biological_processplatelet activation
L0031091cellular_componentplatelet alpha granule
L0031093cellular_componentplatelet alpha granule lumen
L0031639biological_processplasminogen activation
L0034116biological_processpositive regulation of heterotypic cell-cell adhesion
L0036345biological_processplatelet maturation
L0042730biological_processfibrinolysis
L0042802molecular_functionidentical protein binding
L0045907biological_processpositive regulation of vasoconstriction
L0045921biological_processpositive regulation of exocytosis
L0046872molecular_functionmetal ion binding
L0050714biological_processpositive regulation of protein secretion
L0050839molecular_functioncell adhesion molecule binding
L0051258biological_processprotein polymerization
L0051592biological_processresponse to calcium ion
L0062023cellular_componentcollagen-containing extracellular matrix
L0065003biological_processprotein-containing complex assembly
L0070062cellular_componentextracellular exosome
L0070374biological_processpositive regulation of ERK1 and ERK2 cascade
L0070527biological_processplatelet aggregation
L0071347biological_processcellular response to interleukin-1
L0071354biological_processcellular response to interleukin-6
L0072378biological_processblood coagulation, fibrin clot formation
L0072562cellular_componentblood microparticle
L0090277biological_processpositive regulation of peptide hormone secretion
L1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
L1902042biological_processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptors
L2000352biological_processnegative regulation of endothelial cell apoptotic process
Functional Information from PROSITE/UniProt
site_idPS00514
Number of Residues13
DetailsFIBRINOGEN_C_1 Fibrinogen C-terminal domain signature. WWYnrChaAnpNG
ChainResidueDetails
BTRP402-GLY414
CTRP334-GLY346

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:10074346, ECO:0000269|PubMed:19296670, ECO:0000269|PubMed:9016719, ECO:0000269|PubMed:9207064, ECO:0000269|PubMed:9333233, ECO:0000269|PubMed:9628725, ECO:0007744|PDB:1FID
ChainResidueDetails
CASP318
IASP320
IPHE322
IGLY324
LASP318
LASP320
LPHE322
LGLY324
CASP320
CPHE322
CGLY324
FASP318
FASP320
FPHE322
FGLY324
IASP318

site_idSWS_FT_FI2
Number of Residues8
DetailsSITE: Cleavage; by plasmin; to break down fibrin clots
ChainResidueDetails
CLYS58
CLYS62
FLYS58
FLYS62
ILYS58
ILYS62
LLYS58
LLYS62

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Cleavage; by hementin; to prevent blood coagulation
ChainResidueDetails
CPRO76
FPRO76
IPRO76
LPRO76

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphoserine; by FAM20C => ECO:0000269|PubMed:26091039
ChainResidueDetails
CSER42
FSER42
ISER42
LSER42

site_idSWS_FT_FI5
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) (complex) asparagine => ECO:0000269|PubMed:14760718, ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:18780401, ECO:0000269|PubMed:19139490, ECO:0000269|PubMed:19159218
ChainResidueDetails
CASN52
FASN52
IASN52
LASN52

site_idSWS_FT_FI6
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; in variant Asahi
ChainResidueDetails
CASN308
DSER275
DSER432
DSER482
GSER31
GSER262
GSER272
GSER275
GSER432
GSER482
JSER31
FASN308
JSER262
JSER272
JSER275
JSER432
JSER482
IASN308
LASN308
ASER432
ASER482
DSER31
DSER262
DSER272

site_idSWS_FT_FI7
Number of Residues4
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Gln-Lys) (interchain with K-432)
ChainResidueDetails
CGLN398
GSER345
GSER505
GSER541
JSER37
JSER345
JSER505
JSER541
FGLN398
IGLN398
LGLN398
DSER37
DSER345
DSER505
DSER541
GSER37

site_idSWS_FT_FI8
Number of Residues8
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-424)
ChainResidueDetails
ATHR393
CLYS406
GTHR393
FLYS406
ILYS406
LLYS406

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:24275569
ChainResidueDetails
ATHR486
DTHR486
GTHR486
JTHR486

site_idSWS_FT_FI10
Number of Residues4
DetailsMOD_RES: 4-hydroxyproline; by P4HA1 => ECO:0000269|PubMed:19696023
ChainResidueDetails
APRO546
DPRO546
GPRO546
JPRO546

site_idSWS_FT_FI11
Number of Residues4
DetailsCARBOHYD: O-linked (GalNAc...) threonine => ECO:0000269|PubMed:23050552
ChainResidueDetails
ATHR301
DTHR301
GTHR301
JTHR301

site_idSWS_FT_FI12
Number of Residues4
DetailsCARBOHYD: O-linked (GalNAc...) serine => ECO:0000269|PubMed:23050552
ChainResidueDetails
ASER332
DSER332
GSER332
JSER332

site_idSWS_FT_FI13
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; in variant Caracas-2 => ECO:0000269|PubMed:1675636
ChainResidueDetails
ASER434
DSER434
GSER434
JSER434

site_idSWS_FT_FI14
Number of Residues4
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-41 in alpha-2-antiplasmin)
ChainResidueDetails
ALYS303
DLYS303
GLYS303
JLYS303

site_idSWS_FT_FI15
Number of Residues20
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-?) => ECO:0000255
ChainResidueDetails
DLYS562
GLYS508
GLYS539
GLYS556
GLYS562
JLYS508
JLYS539
JLYS556
ALYS508
JLYS562
ALYS539
ALYS556
ALYS562
DLYS508
DLYS539
DLYS556

site_idSWS_FT_FI16
Number of Residues8
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Gln-Lys) (interchain with K-?)
ChainResidueDetails
AGLN328
AGLN366
DGLN328
DGLN366
GGLN328
GGLN366
JGLN328
JGLN366

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon