Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3GCM

Crystal Structure of E. coli polynucleotide phosphorylase bound to RNA and RNase E

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004654molecular_functionpolyribonucleotide nucleotidyltransferase activity
A0006396biological_processRNA processing
A0006402biological_processmRNA catabolic process
B0003723molecular_functionRNA binding
B0004654molecular_functionpolyribonucleotide nucleotidyltransferase activity
B0006396biological_processRNA processing
B0006402biological_processmRNA catabolic process
C0003723molecular_functionRNA binding
C0004654molecular_functionpolyribonucleotide nucleotidyltransferase activity
C0006396biological_processRNA processing
C0006402biological_processmRNA catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE FLC A 550
ChainResidue
AARG93
AHOH1047
AHOH1055
AARG399
AHIS403
AASP486
AASP492
ALYS494
AASP508
AFLC551
AHOH701

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FLC A 551
ChainResidue
AHIS403
AGLY436
ASER437
ASER438
ASER439
ALYS494
AFLC550
AMG552

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 552
ChainResidue
AALA465
AASP492
AFLC551

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE 5GP B 550
ChainResidue
BPHE77
B5GP551
BHOH899

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE 5GP B 551
ChainResidue
BASP366
B5GP550
CPHE77
CPHE78

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE FLC B 552
ChainResidue
BLEU94
BARG153
BASP176
BVAL178
BGLU190
BSER191
BGLU192
BARG409
BHOH731
BHOH1067
BHOH1068

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FLC B 553
ChainResidue
BARG93
BARG399
BHIS403
BASP486
BASP492
BLYS494
BASP508
BFLC555
BHOH721

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FLC B 554
ChainResidue
BGLU192
BARG372
BASP374
BARG405
BLYS408
BARG409
BLEU412
BHOH934

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FLC B 555
ChainResidue
BHIS403
BGLY436
BSER437
BSER438
BSER439
BASP486
BHIS487
BLYS494
BFLC553
BMG556

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 556
ChainResidue
BSER437
BALA465
BASP492
BFLC555

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 5GP C 550
ChainResidue
APHE77
APHE78
CPHE78
CASP366
CHOH1083

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FLC C 551
ChainResidue
CARG93
CARG399
CHIS403
CASP486
CASP492
CLYS494
CASP508
CFLC552
CHOH562

site_idBC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE FLC C 552
ChainResidue
CARG399
CHIS403
CGLY436
CSER437
CSER438
CSER439
CASP486
CHIS487
CLYS494
CFLC551
CMG553

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG C 553
ChainResidue
CALA465
CASP492
CFLC552

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01595
ChainResidueDetails
AASP486
AASP492
BASP486
BASP492
CASP486
CASP492

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon