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3G1V

Crystal structure of the mutant D70G of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 5-fluorouridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 5FU A 501
ChainResidue
AASP20
AARG203
ACL503
AHOH509
AHOH511
AHOH513
AHOH514
AHOH516
AHOH542
BASP75
BILE76
ALYS42
BTHR79
ALYS72
ALEU123
AMET126
ASER127
APRO180
AGLN185
AGLY202

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 5FU B 502
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BLYS72
BLEU123
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BCL229
BHOH235
BHOH237
BHOH244
BHOH512
BHOH518
BHOH544

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 503
ChainResidue
ALYS42
AGLY70
ALYS72
AILE96
A5FU501

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 229
ChainResidue
BLYS42
BGLY70
BLYS72
BILE96
B5FU502

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BGLY70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AGLY70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS72
AGLY70

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BLYS72
BGLY70

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PDB entries from 2024-07-10

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