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3FYC

Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0016433molecular_functionrRNA (adenine) methyltransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
B0000154biological_processrRNA modification
B0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
B0003723molecular_functionRNA binding
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0008168molecular_functionmethyltransferase activity
B0016433molecular_functionrRNA (adenine) methyltransferase activity
B0031167biological_processrRNA methylation
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 1
ChainResidue
ATYR128
ALYS161
AHOH280

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 2
ChainResidue
ALYS181
AASN207
ALYS249
APO4273
AHOH343
AHOH422

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 3
ChainResidue
ALYS53
AARG145
AHOH386

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 273
ChainResidue
APO42
ALYS181
ALYS249

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 B 4
ChainResidue
BPO46
BLYS181
BASN207
BLYS249
BHOH326

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 5
ChainResidue
BLYS53
BARG145
BHOH308
BHOH360

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 B 6
ChainResidue
ALYS62
BPO44
BLYS181
BLYS249
BHOH326

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 7
ChainResidue
BLYS41
BTYR67

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 273
ChainResidue
BTYR128
BLYS132
BLYS161
BHOH390

Functional Information from PROSITE/UniProt
site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLEiGLGkGiLTeelAknakk...VyVIEiD
ChainResidueDetails
AVAL34-ASP61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING:
ChainResidueDetails
ALEU13
AGLU59
AASP84
AASN101
BLEU13
BGLU59
BASP84
BASN101

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00607
ChainResidueDetails
AGLY38
BGLY38

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1qam
ChainResidueDetails
AGLY38
AASN101
AGLU59

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1qam
ChainResidueDetails
BGLY38
BASN101
BGLU59

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PDB entries from 2024-07-24

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