3EXS
Crystal structure of KGPDC from Streptococcus mutans in complex with D-R5P
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
| A | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
| A | 0006730 | biological_process | one-carbon metabolic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
| B | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
| B | 0006730 | biological_process | one-carbon metabolic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
| C | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
| C | 0006730 | biological_process | one-carbon metabolic process |
| C | 0016829 | molecular_function | lyase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
| D | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
| D | 0006730 | biological_process | one-carbon metabolic process |
| D | 0016829 | molecular_function | lyase activity |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE 5RP A 501 |
| Chain | Residue |
| A | ALA11 |
| A | HOH228 |
| A | HOH262 |
| C | ASP69 |
| A | ASP13 |
| A | LYS66 |
| A | TYR119 |
| A | THR174 |
| A | GLY176 |
| A | GLY196 |
| A | ARG197 |
| A | HOH225 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE 5RP D 502 |
| Chain | Residue |
| B | ASP69 |
| D | ALA11 |
| D | ASP13 |
| D | LYS66 |
| D | TYR119 |
| D | HIS141 |
| D | THR174 |
| D | GLY176 |
| D | GLY196 |
| D | ARG197 |
| D | HOH222 |
| D | HOH224 |
| D | HOH226 |
| D | HOH262 |
| D | HOH289 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dbt |
| Chain | Residue | Details |
| A | ASP64 | |
| A | LYS66 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dbt |
| Chain | Residue | Details |
| B | ASP64 | |
| B | LYS66 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dbt |
| Chain | Residue | Details |
| C | ASP64 | |
| C | LYS66 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dbt |
| Chain | Residue | Details |
| D | ASP64 | |
| D | LYS66 |
