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3EU8

Crystal structure of putative glucoamylase (YP_210071.1) from Bacteroides fragilis NCTC 9343 at 2.12 A resolution

Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 1
ChainResidue
ASER32
ATHR35
AEDO459
AHOH534
AHOH584
BASP100

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K D 2
ChainResidue
CTYR169
CHOH505
DSER32
DTHR35
AHOH676
CK5
CASP100

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K C 3
ChainResidue
AHOH702
AHOH785
CSER32
CTHR35
CEDO459
DASP100
DTYR169

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 4
ChainResidue
AASP100
ATYR169
AHOH667
AHOH681
BEDO8
BSER32
BTHR35

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE K C 5
ChainResidue
CTYR169
DK2

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 6
ChainResidue
BHIS378
BGLU382

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 7
ChainResidue
AHOH756
AHOH800
CARG307
CARG314
CGLN372
DPRO80
DGLU81
DGLU137

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 8
ChainResidue
AILE99
AASP100
ATYR169
BK4
BSER33
BTHR35
BLEU37
BEDO460

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 9
ChainResidue
AEDO12
AGLY102
ASER105
AHOH652
BTHR45
BARG49
BTYR381

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 10
ChainResidue
BGLN439
BLYS443
BPHE447
BVAL449

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 11
ChainResidue
AEDO12
AARG48
APHE51
AASN52
ATYR103
AHOH1074

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 12
ChainResidue
AEDO11
AGLY102
ATYR103
AHOH847
BEDO9
BEDO14
BARG48

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 13
ChainResidue
AARG48
AEDO475
AHOH1074
BEDO14
BGLY102
BTYR103

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 14
ChainResidue
AEDO12
AEDO13
AHOH847
BASN52

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 15
ChainResidue
CEDO17
CARG48
CEDO460
DGLY102
DTYR103

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 16
ChainResidue
CTHR35
CEDO456
CEDO459
DARG106

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 17
ChainResidue
CEDO15
CEDO460
DPHE51
DASN52
DHOH533
DHOH594

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 18
ChainResidue
BASP330
BCYS331
BHOH596
BGLY326
BGLY328
BPRO329

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 19
ChainResidue
CGLY326
CGLY328
CPRO329
CASP330
CHIS379

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 20
ChainResidue
AGLU266
AHIS268
AGLU305
AASN308
AHOH759
AHOH875

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 21
ChainResidue
AGLU225
AHOH569
AHOH826

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 452
ChainResidue
AASN61
ALYS115
APHE119
ALYS122

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 452
ChainResidue
CARG307
CTHR369
CPRO370
CASP371
CGLN372
DGLY79
DGLU81

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 453
ChainResidue
CARG106
CGLU107
CLEU110
CSER174
CGLU176
CGLU177

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 452
ChainResidue
DGLU266
DHIS268
DGLU305
DASN308
DHOH500
DHOH502

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 452
ChainResidue
BTYR69
BHIS70
BTYR75
BHOH571

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 453
ChainResidue
BARG319
BHIS323
BHOH620

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO D 453
ChainResidue
DVAL367
DTYR423
DTRP429
DEDO458

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO D 454
ChainResidue
DGLU114
DARG183

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 453
ChainResidue
AMSE71
ATYR394
ALYS406
AHOH1024
BEDO457

site_idDC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 454
ChainResidue
AGLU74
APRO76
AARG407

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C 454
ChainResidue
CARG270
CGLY273

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 454
ChainResidue
BARG197
BASN202
BPRO242
BALA244
BHOH482

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 455
ChainResidue
AVAL292
AVAL367
ATYR423
AEDO468

site_idDC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 455
ChainResidue
AHOH763
AHOH800
CARG307
CASN308
DPRO80

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 456
ChainResidue
ASER36
ALEU37
AHIS378
ATYR381
AGLU382

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 456
ChainResidue
CEDO16
CSER36
CLEU37
CHIS378
CTYR381
CGLU382

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 457
ChainResidue
AGLY326
AGLY328
APRO329
AASP330
AHOH1021

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 457
ChainResidue
AHOH1005
CALA171
CLYS178
CHOH609

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 458
ChainResidue
AGLU107
ALEU110
ASER174
AHOH1033

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 458
ChainResidue
CASP100
CTHR425
CLEU427
CLYS430
DHOH529

site_idEC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 455
ChainResidue
BARG106
BGLU107
BLEU110
BSER174
BGLU176
BHOH593

site_idEC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 455
ChainResidue
DGLU107
DLEU110
DSER174
DGLU176
DHOH668

site_idEC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 459
ChainResidue
AK1
ASER33
ATHR35
ALEU37
AHOH1046
BILE99
BASP100

site_idEC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 459
ChainResidue
CK3
CEDO16
CSER33
CTHR35
CLEU37
DILE99
DASP100
DTYR169

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 460
ChainResidue
AHOH829
CEDO15
CEDO17
CARG48
CPHE51
CASN52
DARG48

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 456
ChainResidue
DGLY326
DGLY328
DPRO329
DASP330
DHIS379

site_idFC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 460
ChainResidue
AARG189

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 461
ChainResidue
AGLU114
AARG183
AHOH1075

site_idFC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 462
ChainResidue
ALYS295
AASP296
AASN448

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 461
ChainResidue
CTYR381
CGLY384
DSER105

site_idFC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 456
ChainResidue
AHOH675
BGLU263

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 462
ChainResidue
CASP290
CTRP429
CLYS451

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 457
ChainResidue
AMSE71
AEDO453
BGLU266

site_idGC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 458
ChainResidue
APRO80
AGLU81
AGLU137
BARG307
BARG314
BGLN372
BHOH577

site_idGC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 459
ChainResidue
AGLY79
AGLU81
BARG307
BTHR369
BPRO370
BASP371
BGLN372

site_idGC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D 457
ChainResidue
DASP39
DASP371
DHIS378

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D 458
ChainResidue
DPHE303
DEDO453
DEDO460

site_idGC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 463
ChainResidue
AASP402
ATRP403
ATYR404
AEDO465
AHOH787
BLYS451

site_idGC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 464
ChainResidue
AGLY200
AHOH890

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 465
ChainResidue
AALA401
AASP402
AEDO463
AHOH921

site_idGC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 466
ChainResidue
AASN308
ALEU311
AEDO467

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 467
ChainResidue
AASN304
AARG307
AASN308
AEDO466
AHOH1057

site_idHC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 460
ChainResidue
BEDO8
BALA34
BTHR35

site_idHC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 468
ChainResidue
AARG307
AVAL367
APRO370
AEDO455

site_idHC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 463
ChainResidue
CPRO436
CHOH501
CHOH609

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 461
ChainResidue
AGLU74
BVAL367
BHOH680

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 464
ChainResidue
CASP290
CLYS430
CLYS451
CHOH492

site_idHC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 462
ChainResidue
AHOH625
BALA276
BGLY277
BGLY347
BLEU349
BASP352
BHOH499

site_idHC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D 459
ChainResidue
DMSE71
DTYR391
DHOH499

site_idHC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 460
ChainResidue
DVAL292
DGLY293
DSER301
DEDO458
DHOH645

site_idHC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 469
ChainResidue
AASP100
ATHR425
ALEU427
ALYS430
AHOH961

site_idIC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 470
ChainResidue
AGLU67
ATYR338
ALEU409
AHOH984

site_idIC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 461
ChainResidue
DALA276
DGLY277
DGLY347
DLEU349
DASP352
DHOH586

site_idIC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 471
ChainResidue
ALYS122
AASP124
ATHR138
AGLY139
AHIS140

site_idIC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 472
ChainResidue
AARG68
AILE82
ATRP133

site_idIC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 473
ChainResidue
AGLN439
ALYS443
APHE447

site_idIC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO B 463
ChainResidue
BPHE54
BGLY63
BLEU64
BALA65
BSER88
BGLY91
BILE95
BARG112
BILE116

site_idIC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 474
ChainResidue
APHE54
AGLY63
AALA65
ASER88
AGLY91
AILE92
AILE95
AARG112
AILE116

site_idIC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 462
ChainResidue
CGLY102
CVAL104
DTHR45
DARG49
DTYR381

site_idIC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 475
ChainResidue
AEDO13
ATHR45
AARG49
ATYR381
AEDO477
BGLY102

site_idJC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 464
ChainResidue
BGLU67
BHIS132
BTYR343
BILE411
BEDO465
BHOH575

site_idJC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 465
ChainResidue
BGLU67
BARG68
BTYR338
BEDO464

site_idJC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 476
ChainResidue
AASP290
AMSE433
ALYS451
AHOH655

site_idJC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO D 463
ChainResidue
CVAL367
CTYR423
CTRP429
DGLU74

site_idJC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO D 464
ChainResidue
DGLU67
DARG68
DTYR338
DHOH497

site_idJC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 466
ChainResidue
AHOH831
BHIS167
BGLN168
BPRO436

site_idJC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 467
ChainResidue
BGLU225
BTRP281
BHOH515

site_idJC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 465
ChainResidue
AHOH751
DTRP206
DGLU225
DTRP281
DHOH614

site_idJC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 477
ChainResidue
AARG49
APHE388
AGLY389
APRO390
AEDO475
AHOH946

224201

PDB entries from 2024-08-28

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