3EU8
Crystal structure of putative glucoamylase (YP_210071.1) from Bacteroides fragilis NCTC 9343 at 2.12 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-08-03 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91162,0.97929,0.97920 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.180, 71.760, 221.790 |
Unit cell angles | 90.00, 92.30, 90.00 |
Refinement procedure
Resolution | 29.591 - 2.120 |
R-factor | 0.161 |
Rwork | 0.158 |
R-free | 0.21300 |
Structure solution method | MAD |
RMSD bond length | 0.016 |
RMSD bond angle | 1.396 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.591 | 29.591 | 2.200 |
High resolution limit [Å] | 2.120 | 4.550 | 2.120 |
Rmerge | 0.090 | 0.037 | 0.409 |
Number of reflections | 102011 | 19663 | 18064 |
<I/σ(I)> | 5.54 | 13.4 | 1.5 |
Completeness [%] | 90.7 | 95.6 | 84.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 15.8% polyethylene glycol 3350, 0.1M potassium fluoride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |