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3ETM

Crystal structure of the mimivirus NDK +KPN-N62L-R107G triple mutant complexed with CDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 202
ChainResidue
AHOH200
ACDP201
AHOH205

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE CDP A 201
ChainResidue
AARG103
AILE110
AGLY111
AASN113
AHOH161
AHOH192
AHOH199
AMG202
AHOH218
AHOH254
ALYS9
AHIS53
ATYR58
ALEU62
AARG86
ATHR92

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BCDP201
BHOH203
BHOH221

site_idAC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE CDP B 201
ChainResidue
BLYS9
BHIS53
BTYR58
BLEU62
BARG86
BTHR92
BARG103
BILE110
BGLY111
BASN113
BHOH145
BHOH155
BHOH160
BHOH161
BHOH165
BHOH197
BMG202
BHOH205
BHOH212
BHOH230

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDP_KINASES Nucleoside diphosphate kinases active site. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
ChainResidueDetails
AHIS116
BHIS116

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS9
BASN113
ATYR58
AARG86
AARG103
AASN113
BLYS9
BTYR58
BARG86
BARG103

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PDB entries from 2024-03-27

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