Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ENA

Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dGDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE DGI A 201
ChainResidue
ALYS9
AASN113
AMG202
AHOH213
AHOH233
AHOH236
AHOH248
AHOH266
AHOH279
AHOH304
AHOH305
ATYR50
AHOH315
AHIS53
ATYR58
ALEU62
AARG86
ATHR92
AARG103
AILE110

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 202
ChainResidue
ADGI201
AHOH237
AHOH240

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DGI B 201
ChainResidue
BLYS9
BTYR50
BHIS53
BTYR58
BLEU62
BARG86
BTHR92
BARG103
BILE110
BASN113
BMG202
BHOH311
BHOH317
BHOH376
BHOH382
BHOH385
BHOH388
BHOH402
BHOH407

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BDGI201
BHOH332
BHOH407

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
ChainResidueDetails
AHIS116
BHIS116

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS9
ATYR58
AARG86
AARG103
AASN113
BLYS9
BTYR58
BARG86
BARG103
BASN113

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon