3EKM
Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor DL-AziDAP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0008837 | molecular_function | diaminopimelate epimerase activity |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0005737 | cellular_component | cytoplasm |
B | 0008837 | molecular_function | diaminopimelate epimerase activity |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
C | 0005737 | cellular_component | cytoplasm |
C | 0008837 | molecular_function | diaminopimelate epimerase activity |
C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
D | 0005737 | cellular_component | cytoplasm |
D | 0008837 | molecular_function | diaminopimelate epimerase activity |
D | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
E | 0005737 | cellular_component | cytoplasm |
E | 0008837 | molecular_function | diaminopimelate epimerase activity |
E | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
F | 0005737 | cellular_component | cytoplasm |
F | 0008837 | molecular_function | diaminopimelate epimerase activity |
F | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE ZDR A 500 |
Chain | Residue |
A | ASN37 |
A | ASN227 |
A | GLU245 |
A | ARG246 |
A | CYS254 |
A | GLY255 |
A | THR256 |
A | HOH514 |
A | PHE39 |
A | ASN90 |
A | PRO96 |
A | MET98 |
A | CYS99 |
A | GLY100 |
A | ASN101 |
A | ASN188 |
site_id | AC2 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE ZDR B 500 |
Chain | Residue |
B | ASN37 |
B | PHE39 |
B | ASN90 |
B | PRO96 |
B | CYS99 |
B | GLY100 |
B | ASN101 |
B | ASN188 |
B | ASN227 |
B | GLU245 |
B | ARG246 |
B | CYS254 |
B | GLY255 |
B | THR256 |
B | HOH671 |
site_id | AC3 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE ZDR C 500 |
Chain | Residue |
C | ASN37 |
C | PHE39 |
C | ASN90 |
C | PRO96 |
C | CYS99 |
C | GLY100 |
C | ASN101 |
C | ASN188 |
C | ASN227 |
C | GLU245 |
C | ARG246 |
C | CYS254 |
C | GLY255 |
C | THR256 |
C | HOH859 |
site_id | AC4 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE ZDR D 500 |
Chain | Residue |
D | ASN37 |
D | ASN90 |
D | PRO96 |
D | CYS99 |
D | GLY100 |
D | ASN101 |
D | ASN188 |
D | ASN227 |
D | GLU245 |
D | ARG246 |
D | CYS254 |
D | GLY255 |
D | THR256 |
site_id | AC5 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE ZDR E 500 |
Chain | Residue |
E | ASN37 |
E | PHE39 |
E | ASN90 |
E | PRO96 |
E | CYS99 |
E | GLY100 |
E | ASN101 |
E | ASN188 |
E | ASN227 |
E | GLU245 |
E | ARG246 |
E | CYS254 |
E | GLY255 |
E | THR256 |
E | HOH556 |
site_id | AC6 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE ZDR F 500 |
Chain | Residue |
F | ASN37 |
F | PHE39 |
F | ASN90 |
F | PRO96 |
F | CYS99 |
F | GLY100 |
F | ASN101 |
F | ASN188 |
F | ASN227 |
F | GLU245 |
F | ARG246 |
F | CYS254 |
F | GLY255 |
F | THR256 |
F | HOH587 |
Functional Information from PROSITE/UniProt
site_id | PS01326 |
Number of Residues | 15 |
Details | DAP_EPIMERASE Diaminopimelate epimerase signature. NsDGSepemCGNGvR |
Chain | Residue | Details |
A | ASN90-ARG104 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | ACT_SITE: |
Chain | Residue | Details |
A | CYS99 | |
E | CYS254 | |
F | CYS99 | |
F | CYS254 | |
A | CYS254 | |
B | CYS99 | |
B | CYS254 | |
C | CYS99 | |
C | CYS254 | |
D | CYS99 | |
D | CYS254 | |
E | CYS99 |
site_id | SWS_FT_FI2 |
Number of Residues | 42 |
Details | BINDING: |
Chain | Residue | Details |
A | ASN37 | |
B | GLY100 | |
B | ASN188 | |
B | ASN227 | |
B | GLU245 | |
B | GLY255 | |
C | ASN37 | |
C | ASN90 | |
C | GLY100 | |
C | ASN188 | |
C | ASN227 | |
A | ASN90 | |
C | GLU245 | |
C | GLY255 | |
D | ASN37 | |
D | ASN90 | |
D | GLY100 | |
D | ASN188 | |
D | ASN227 | |
D | GLU245 | |
D | GLY255 | |
E | ASN37 | |
A | GLY100 | |
E | ASN90 | |
E | GLY100 | |
E | ASN188 | |
E | ASN227 | |
E | GLU245 | |
E | GLY255 | |
F | ASN37 | |
F | ASN90 | |
F | GLY100 | |
F | ASN188 | |
A | ASN188 | |
F | ASN227 | |
F | GLU245 | |
F | GLY255 | |
A | ASN227 | |
A | GLU245 | |
A | GLY255 | |
B | ASN37 | |
B | ASN90 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | MOD_RES: N-acetylalanine => ECO:0007744|PubMed:22223895 |
Chain | Residue | Details |
A | ALA2 | |
B | ALA2 | |
C | ALA2 | |
D | ALA2 | |
E | ALA2 | |
F | ALA2 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
A | GLU245 | |
A | CYS254 | |
A | CYS99 | |
A | HIS190 |
site_id | CSA2 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
B | GLU245 | |
B | CYS254 | |
B | CYS99 | |
B | HIS190 |
site_id | CSA3 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
C | GLU245 | |
C | CYS254 | |
C | CYS99 | |
C | HIS190 |
site_id | CSA4 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
D | GLU245 | |
D | CYS254 | |
D | CYS99 | |
D | HIS190 |
site_id | CSA5 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
E | GLU245 | |
E | CYS254 | |
E | CYS99 | |
E | HIS190 |
site_id | CSA6 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bwz |
Chain | Residue | Details |
F | GLU245 | |
F | CYS254 | |
F | CYS99 | |
F | HIS190 |