3EJX
Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana in complex with LL-AziDAP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008837 | molecular_function | diaminopimelate epimerase activity |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008837 | molecular_function | diaminopimelate epimerase activity |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0008837 | molecular_function | diaminopimelate epimerase activity |
| C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0008837 | molecular_function | diaminopimelate epimerase activity |
| D | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0008837 | molecular_function | diaminopimelate epimerase activity |
| E | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0008837 | molecular_function | diaminopimelate epimerase activity |
| F | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE ZDP A 500 |
| Chain | Residue |
| A | ASN37 |
| A | ASN227 |
| A | GLU245 |
| A | ARG246 |
| A | CYS254 |
| A | GLY255 |
| A | THR256 |
| A | PHE39 |
| A | ASN90 |
| A | PRO96 |
| A | MET98 |
| A | CYS99 |
| A | GLY100 |
| A | ASN101 |
| A | ASN188 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE ZDP B 500 |
| Chain | Residue |
| B | ASN37 |
| B | PHE39 |
| B | ASN90 |
| B | PRO96 |
| B | MET98 |
| B | CYS99 |
| B | GLY100 |
| B | ASN101 |
| B | ASN188 |
| B | ASN227 |
| B | GLU245 |
| B | ARG246 |
| B | CYS254 |
| B | GLY255 |
| B | THR256 |
| site_id | AC3 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE ZDP C 500 |
| Chain | Residue |
| C | ASN37 |
| C | PHE39 |
| C | ASN90 |
| C | PRO96 |
| C | CYS99 |
| C | GLY100 |
| C | ASN101 |
| C | ASN188 |
| C | ASN227 |
| C | GLU245 |
| C | ARG246 |
| C | CYS254 |
| C | GLY255 |
| C | THR256 |
| site_id | AC4 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE ZDP D 500 |
| Chain | Residue |
| D | ASN37 |
| D | PHE39 |
| D | ASN90 |
| D | PRO96 |
| D | CYS99 |
| D | GLY100 |
| D | ASN101 |
| D | ASN188 |
| D | ASN227 |
| D | GLU245 |
| D | ARG246 |
| D | CYS254 |
| D | GLY255 |
| D | THR256 |
| site_id | AC5 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE ZDP E 500 |
| Chain | Residue |
| E | ASN37 |
| E | PHE39 |
| E | ASN90 |
| E | PRO96 |
| E | CYS99 |
| E | GLY100 |
| E | ASN101 |
| E | ASN188 |
| E | ASN227 |
| E | GLU245 |
| E | ARG246 |
| E | CYS254 |
| E | GLY255 |
| E | THR256 |
| site_id | AC6 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE ZDP F 500 |
| Chain | Residue |
| F | ASN37 |
| F | PHE39 |
| F | ASN90 |
| F | PRO96 |
| F | CYS99 |
| F | GLY100 |
| F | ASN101 |
| F | ASN188 |
| F | ASN227 |
| F | GLU245 |
| F | ARG246 |
| F | CYS254 |
| F | GLY255 |
| F | THR256 |
Functional Information from PROSITE/UniProt
| site_id | PS01326 |
| Number of Residues | 15 |
| Details | DAP_EPIMERASE Diaminopimelate epimerase signature. NsDGSepemCGNGvR |
| Chain | Residue | Details |
| A | ASN90-ARG104 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 12 |
| Details | ACT_SITE: |
| Chain | Residue | Details |
| A | CYS99 | |
| E | CYS254 | |
| F | CYS99 | |
| F | CYS254 | |
| A | CYS254 | |
| B | CYS99 | |
| B | CYS254 | |
| C | CYS99 | |
| C | CYS254 | |
| D | CYS99 | |
| D | CYS254 | |
| E | CYS99 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 42 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | ASN37 | |
| B | GLY100 | |
| B | ASN188 | |
| B | ASN227 | |
| B | GLU245 | |
| B | GLY255 | |
| C | ASN37 | |
| C | ASN90 | |
| C | GLY100 | |
| C | ASN188 | |
| C | ASN227 | |
| A | ASN90 | |
| C | GLU245 | |
| C | GLY255 | |
| D | ASN37 | |
| D | ASN90 | |
| D | GLY100 | |
| D | ASN188 | |
| D | ASN227 | |
| D | GLU245 | |
| D | GLY255 | |
| E | ASN37 | |
| A | GLY100 | |
| E | ASN90 | |
| E | GLY100 | |
| E | ASN188 | |
| E | ASN227 | |
| E | GLU245 | |
| E | GLY255 | |
| F | ASN37 | |
| F | ASN90 | |
| F | GLY100 | |
| F | ASN188 | |
| A | ASN188 | |
| F | ASN227 | |
| F | GLU245 | |
| F | GLY255 | |
| A | ASN227 | |
| A | GLU245 | |
| A | GLY255 | |
| B | ASN37 | |
| B | ASN90 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | MOD_RES: N-acetylalanine => ECO:0007744|PubMed:22223895 |
| Chain | Residue | Details |
| A | ALA2 | |
| B | ALA2 | |
| C | ALA2 | |
| D | ALA2 | |
| E | ALA2 | |
| F | ALA2 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| A | GLU245 | |
| A | CYS254 | |
| A | CYS99 | |
| A | HIS190 |
| site_id | CSA2 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| B | GLU245 | |
| B | CYS254 | |
| B | CYS99 | |
| B | HIS190 |
| site_id | CSA3 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| C | GLU245 | |
| C | CYS254 | |
| C | CYS99 | |
| C | HIS190 |
| site_id | CSA4 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| D | GLU245 | |
| D | CYS254 | |
| D | CYS99 | |
| D | HIS190 |
| site_id | CSA5 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| E | GLU245 | |
| E | CYS254 | |
| E | CYS99 | |
| E | HIS190 |
| site_id | CSA6 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 1bwz |
| Chain | Residue | Details |
| F | GLU245 | |
| F | CYS254 | |
| F | CYS99 | |
| F | HIS190 |
