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3E8C

Crystal structures of the kinase domain of PKA in complex with ATP-competitive inhibitors

Functional Information from GO Data
ChainGOidnamespacecontents
A0001669cellular_componentacrosomal vesicle
A0001707biological_processmesoderm formation
A0004672molecular_functionprotein kinase activity
A0004674molecular_functionprotein serine/threonine kinase activity
A0004679molecular_functionAMP-activated protein kinase activity
A0004691molecular_functioncAMP-dependent protein kinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0005952cellular_componentcAMP-dependent protein kinase complex
A0006468biological_processprotein phosphorylation
A0010737biological_processprotein kinase A signaling
A0018105biological_processpeptidyl-serine phosphorylation
A0019904molecular_functionprotein domain specific binding
A0031594cellular_componentneuromuscular junction
A0034237molecular_functionprotein kinase A regulatory subunit binding
A0034605biological_processcellular response to heat
A0036126cellular_componentsperm flagellum
A0048471cellular_componentperinuclear region of cytoplasm
A0106310molecular_functionprotein serine kinase activity
A1904262biological_processnegative regulation of TORC1 signaling
B0001669cellular_componentacrosomal vesicle
B0001707biological_processmesoderm formation
B0004672molecular_functionprotein kinase activity
B0004674molecular_functionprotein serine/threonine kinase activity
B0004679molecular_functionAMP-activated protein kinase activity
B0004691molecular_functioncAMP-dependent protein kinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005952cellular_componentcAMP-dependent protein kinase complex
B0006468biological_processprotein phosphorylation
B0010737biological_processprotein kinase A signaling
B0018105biological_processpeptidyl-serine phosphorylation
B0019904molecular_functionprotein domain specific binding
B0031594cellular_componentneuromuscular junction
B0034237molecular_functionprotein kinase A regulatory subunit binding
B0034605biological_processcellular response to heat
B0036126cellular_componentsperm flagellum
B0048471cellular_componentperinuclear region of cytoplasm
B0106310molecular_functionprotein serine kinase activity
B1904262biological_processnegative regulation of TORC1 signaling
C0001669cellular_componentacrosomal vesicle
C0001707biological_processmesoderm formation
C0004672molecular_functionprotein kinase activity
C0004674molecular_functionprotein serine/threonine kinase activity
C0004679molecular_functionAMP-activated protein kinase activity
C0004691molecular_functioncAMP-dependent protein kinase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0005952cellular_componentcAMP-dependent protein kinase complex
C0006468biological_processprotein phosphorylation
C0010737biological_processprotein kinase A signaling
C0018105biological_processpeptidyl-serine phosphorylation
C0019904molecular_functionprotein domain specific binding
C0031594cellular_componentneuromuscular junction
C0034237molecular_functionprotein kinase A regulatory subunit binding
C0034605biological_processcellular response to heat
C0036126cellular_componentsperm flagellum
C0048471cellular_componentperinuclear region of cytoplasm
C0106310molecular_functionprotein serine kinase activity
C1904262biological_processnegative regulation of TORC1 signaling
D0001669cellular_componentacrosomal vesicle
D0001707biological_processmesoderm formation
D0004672molecular_functionprotein kinase activity
D0004674molecular_functionprotein serine/threonine kinase activity
D0004679molecular_functionAMP-activated protein kinase activity
D0004691molecular_functioncAMP-dependent protein kinase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0005952cellular_componentcAMP-dependent protein kinase complex
D0006468biological_processprotein phosphorylation
D0010737biological_processprotein kinase A signaling
D0018105biological_processpeptidyl-serine phosphorylation
D0019904molecular_functionprotein domain specific binding
D0031594cellular_componentneuromuscular junction
D0034237molecular_functionprotein kinase A regulatory subunit binding
D0034605biological_processcellular response to heat
D0036126cellular_componentsperm flagellum
D0048471cellular_componentperinuclear region of cytoplasm
D0106310molecular_functionprotein serine kinase activity
D1904262biological_processnegative regulation of TORC1 signaling
E0001669cellular_componentacrosomal vesicle
E0001707biological_processmesoderm formation
E0004672molecular_functionprotein kinase activity
E0004674molecular_functionprotein serine/threonine kinase activity
E0004679molecular_functionAMP-activated protein kinase activity
E0004691molecular_functioncAMP-dependent protein kinase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005739cellular_componentmitochondrion
E0005829cellular_componentcytosol
E0005886cellular_componentplasma membrane
E0005952cellular_componentcAMP-dependent protein kinase complex
E0006468biological_processprotein phosphorylation
E0010737biological_processprotein kinase A signaling
E0018105biological_processpeptidyl-serine phosphorylation
E0019904molecular_functionprotein domain specific binding
E0031594cellular_componentneuromuscular junction
E0034237molecular_functionprotein kinase A regulatory subunit binding
E0034605biological_processcellular response to heat
E0036126cellular_componentsperm flagellum
E0048471cellular_componentperinuclear region of cytoplasm
E0106310molecular_functionprotein serine kinase activity
E1904262biological_processnegative regulation of TORC1 signaling
F0001669cellular_componentacrosomal vesicle
F0001707biological_processmesoderm formation
F0004672molecular_functionprotein kinase activity
F0004674molecular_functionprotein serine/threonine kinase activity
F0004679molecular_functionAMP-activated protein kinase activity
F0004691molecular_functioncAMP-dependent protein kinase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005739cellular_componentmitochondrion
F0005829cellular_componentcytosol
F0005886cellular_componentplasma membrane
F0005952cellular_componentcAMP-dependent protein kinase complex
F0006468biological_processprotein phosphorylation
F0010737biological_processprotein kinase A signaling
F0018105biological_processpeptidyl-serine phosphorylation
F0019904molecular_functionprotein domain specific binding
F0031594cellular_componentneuromuscular junction
F0034237molecular_functionprotein kinase A regulatory subunit binding
F0034605biological_processcellular response to heat
F0036126cellular_componentsperm flagellum
F0048471cellular_componentperinuclear region of cytoplasm
F0106310molecular_functionprotein serine kinase activity
F1904262biological_processnegative regulation of TORC1 signaling
G0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
G0006469biological_processnegative regulation of protein kinase activity
H0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
H0006469biological_processnegative regulation of protein kinase activity
I0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
I0006469biological_processnegative regulation of protein kinase activity
J0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
J0006469biological_processnegative regulation of protein kinase activity
K0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
K0006469biological_processnegative regulation of protein kinase activity
L0004862molecular_functioncAMP-dependent protein kinase inhibitor activity
L0006469biological_processnegative regulation of protein kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE G96 A 351
ChainResidue
ALEU49
AMET120
AGLU121
ATYR122
AVAL123
ALEU173
ATHR183
AASP184
APHE185
APHE327
AGLY52
APHE54
AGLY55
AARG56
ALYS72
AGLU91
ALEU95
AVAL104

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE G96 B 351
ChainResidue
BGLY50
BGLY52
BPHE54
BGLY55
BARG56
BVAL57
BLYS72
BLEU74
BGLU91
BLEU95
BVAL104
BMET120
BGLU121
BTYR122
BVAL123
BLEU173
BTHR183
BASP184
BPHE185
BPHE327
BHOH706
BHOH728
BHOH752

site_idAC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE G96 C 351
ChainResidue
CLEU49
CPHE54
CGLY55
CARG56
CVAL57
CLYS72
CLEU74
CGLU91
CLEU95
CVAL104
CMET120
CGLU121
CTYR122
CVAL123
CLEU173
CTHR183
CASP184
CPHE185
CPHE327
CHOH392

site_idAC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE G96 D 351
ChainResidue
DLEU49
DGLY50
DGLY52
DPHE54
DGLY55
DARG56
DVAL57
DLYS72
DLEU74
DGLU91
DLEU95
DVAL104
DMET120
DGLU121
DTYR122
DVAL123
DLEU173
DTHR183
DASP184
DPHE185
DPHE327
DHOH389

site_idAC5
Number of Residues20
DetailsBINDING SITE FOR RESIDUE G96 E 351
ChainResidue
ETHR183
EASP184
EPHE185
EPHE327
ELEU49
EGLY52
EPHE54
EGLY55
EARG56
EVAL57
ELYS72
ELEU74
EGLU91
ELEU95
EVAL104
EMET120
EGLU121
ETYR122
EVAL123
ELEU173

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE G96 F 351
ChainResidue
FLEU49
FPHE54
FGLY55
FARG56
FVAL57
FLYS72
FLEU74
FGLU91
FLEU95
FVAL104
FMET120
FGLU121
FTYR122
FVAL123
FLEU173
FTHR183
FASP184
FPHE185
FPHE327
FHOH397

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues24
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGTGSFGRVMlVkhmetgnh..........YAMK
ChainResidueDetails
ALEU49-LYS72

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. LiYrDLKpeNLLI
ChainResidueDetails
ALEU162-ILE174

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsSITE: Important for inhibition => ECO:0000250
ChainResidueDetails
GARG15
JARG15
JARG18
JARG19
KARG15
KARG18
KARG19
LARG15
LARG18
LARG19
GARG18
GARG19
HARG15
HARG18
HARG19
IARG15
IARG18
IARG19

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING:
ChainResidueDetails
ALEU49
ELYS72
FLEU49
FLYS72
ALYS72
BLEU49
BLYS72
CLEU49
CLYS72
DLEU49
DLYS72
ELEU49

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159
ChainResidueDetails
AGLU121
ELYS168
FGLU121
FLYS168
ALYS168
BGLU121
BLYS168
CGLU121
CLYS168
DGLU121
DLYS168
EGLU121

site_idSWS_FT_FI4
Number of Residues6
DetailsMOD_RES: Deamidated asparagine; partial => ECO:0000269|PubMed:10684253, ECO:0000269|PubMed:11152138, ECO:0000269|PubMed:9521123
ChainResidueDetails
AASN2
BASN2
CASN2
DASN2
EASN2
FASN2

site_idSWS_FT_FI5
Number of Residues6
DetailsMOD_RES: Phosphoserine; by autocatalysis => ECO:0000250|UniProtKB:P05132
ChainResidueDetails
ASEP10
BSEP10
CSEP10
DSEP10
ESEP10
FSEP10

site_idSWS_FT_FI6
Number of Residues12
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P17612
ChainResidueDetails
ATHR48
ETHR195
FTHR48
FTHR195
ATHR195
BTHR48
BTHR195
CTHR48
CTHR195
DTHR48
DTHR195
ETHR48

site_idSWS_FT_FI7
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P05132
ChainResidueDetails
ASER139
BSER139
CSER139
DSER139
ESER139
FSER139

site_idSWS_FT_FI8
Number of Residues6
DetailsMOD_RES: Phosphothreonine; by PDPK1 => ECO:0000269|PubMed:6262777
ChainResidueDetails
ATPO197
BTPO197
CTPO197
DTPO197
ETPO197
FTPO197

site_idSWS_FT_FI9
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P05132
ChainResidueDetails
ATYR330
BTYR330
CTYR330
DTYR330
ETYR330
FTYR330

site_idSWS_FT_FI10
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:6262777
ChainResidueDetails
ASEP338
BSEP338
CSEP338
DSEP338
ESEP338
FSEP338

site_idSWS_FT_FI11
Number of Residues6
DetailsLIPID: N-myristoyl glycine => ECO:0000269|PubMed:6262777
ChainResidueDetails
AGLY1
BGLY1
CGLY1
DGLY1
EGLY1
FGLY1

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AGLU170
AASP166

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BGLU170
BASP166

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
CGLU170
CASP166

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
DGLU170
DASP166

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
EGLU170
EASP166

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
FGLU170
FASP166

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP166
ALYS168

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP166
BLYS168

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
CASP166
CLYS168

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
DASP166
DLYS168

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
EASP166
ELYS168

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
FASP166
FLYS168

site_idCSA13
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
ATHR201
AASP166
ALYS168

site_idCSA14
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BTHR201
BASP166
BLYS168

site_idCSA15
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
CTHR201
CASP166
CLYS168

site_idCSA16
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
DTHR201
DASP166
DLYS168

site_idCSA17
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
ETHR201
EASP166
ELYS168

site_idCSA18
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
FTHR201
FASP166
FLYS168

site_idCSA19
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP166
AASN171
ALYS168

site_idCSA20
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP166
BASN171
BLYS168

site_idCSA21
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
CASP166
CASN171
CLYS168

site_idCSA22
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
DASP166
DASN171
DLYS168

site_idCSA23
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
EASP166
EASN171
ELYS168

site_idCSA24
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
FASP166
FASN171
FLYS168

site_idMCSA1
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
AASP166activator, proton acceptor, proton donor
ALYS168electrostatic stabiliser, polar interaction
AASN171metal ligand
AASP184metal ligand
ATHR201electrostatic stabiliser, polar interaction

site_idMCSA2
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
BASP166activator, proton acceptor, proton donor
BLYS168electrostatic stabiliser, polar interaction
BASN171metal ligand
BASP184metal ligand
BTHR201electrostatic stabiliser, polar interaction

site_idMCSA3
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
CASP166activator, proton acceptor, proton donor
CLYS168electrostatic stabiliser, polar interaction
CASN171metal ligand
CASP184metal ligand
CTHR201electrostatic stabiliser, polar interaction

site_idMCSA4
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
DASP166activator, proton acceptor, proton donor
DLYS168electrostatic stabiliser, polar interaction
DASN171metal ligand
DASP184metal ligand
DTHR201electrostatic stabiliser, polar interaction

site_idMCSA5
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
EASP166activator, proton acceptor, proton donor
ELYS168electrostatic stabiliser, polar interaction
EASN171metal ligand
EASP184metal ligand
ETHR201electrostatic stabiliser, polar interaction

site_idMCSA6
Number of Residues5
DetailsM-CSA 757
ChainResidueDetails
FASP166activator, proton acceptor, proton donor
FLYS168electrostatic stabiliser, polar interaction
FASN171metal ligand
FASP184metal ligand
FTHR201electrostatic stabiliser, polar interaction

219140

PDB entries from 2024-05-01

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