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3E3N

The Glycogen phosphorylase b R state- AMP complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0005977biological_processglycogen metabolic process
A0005980biological_processglycogen catabolic process
A0008152biological_processmetabolic process
A0008184molecular_functionglycogen phosphorylase activity
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0030170molecular_functionpyridoxal phosphate binding
A0098723cellular_componentskeletal muscle myofibril
A0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
A0102499molecular_functionSHG alpha-glucan phosphorylase activity
B0000166molecular_functionnucleotide binding
B0003824molecular_functioncatalytic activity
B0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
B0005737cellular_componentcytoplasm
B0005975biological_processcarbohydrate metabolic process
B0005977biological_processglycogen metabolic process
B0005980biological_processglycogen catabolic process
B0008152biological_processmetabolic process
B0008184molecular_functionglycogen phosphorylase activity
B0016740molecular_functiontransferase activity
B0016757molecular_functionglycosyltransferase activity
B0030170molecular_functionpyridoxal phosphate binding
B0098723cellular_componentskeletal muscle myofibril
B0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
B0102499molecular_functionSHG alpha-glucan phosphorylase activity
C0000166molecular_functionnucleotide binding
C0003824molecular_functioncatalytic activity
C0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
C0005737cellular_componentcytoplasm
C0005975biological_processcarbohydrate metabolic process
C0005977biological_processglycogen metabolic process
C0005980biological_processglycogen catabolic process
C0008152biological_processmetabolic process
C0008184molecular_functionglycogen phosphorylase activity
C0016740molecular_functiontransferase activity
C0016757molecular_functionglycosyltransferase activity
C0030170molecular_functionpyridoxal phosphate binding
C0098723cellular_componentskeletal muscle myofibril
C0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
C0102499molecular_functionSHG alpha-glucan phosphorylase activity
D0000166molecular_functionnucleotide binding
D0003824molecular_functioncatalytic activity
D0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
D0005737cellular_componentcytoplasm
D0005975biological_processcarbohydrate metabolic process
D0005977biological_processglycogen metabolic process
D0005980biological_processglycogen catabolic process
D0008152biological_processmetabolic process
D0008184molecular_functionglycogen phosphorylase activity
D0016740molecular_functiontransferase activity
D0016757molecular_functionglycosyltransferase activity
D0030170molecular_functionpyridoxal phosphate binding
D0098723cellular_componentskeletal muscle myofibril
D0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
D0102499molecular_functionSHG alpha-glucan phosphorylase activity
E0000166molecular_functionnucleotide binding
E0003824molecular_functioncatalytic activity
E0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
E0005737cellular_componentcytoplasm
E0005975biological_processcarbohydrate metabolic process
E0005977biological_processglycogen metabolic process
E0005980biological_processglycogen catabolic process
E0008152biological_processmetabolic process
E0008184molecular_functionglycogen phosphorylase activity
E0016740molecular_functiontransferase activity
E0016757molecular_functionglycosyltransferase activity
E0030170molecular_functionpyridoxal phosphate binding
E0098723cellular_componentskeletal muscle myofibril
E0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
E0102499molecular_functionSHG alpha-glucan phosphorylase activity
F0000166molecular_functionnucleotide binding
F0003824molecular_functioncatalytic activity
F0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
F0005737cellular_componentcytoplasm
F0005975biological_processcarbohydrate metabolic process
F0005977biological_processglycogen metabolic process
F0005980biological_processglycogen catabolic process
F0008152biological_processmetabolic process
F0008184molecular_functionglycogen phosphorylase activity
F0016740molecular_functiontransferase activity
F0016757molecular_functionglycosyltransferase activity
F0030170molecular_functionpyridoxal phosphate binding
F0098723cellular_componentskeletal muscle myofibril
F0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
F0102499molecular_functionSHG alpha-glucan phosphorylase activity
G0000166molecular_functionnucleotide binding
G0003824molecular_functioncatalytic activity
G0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
G0005737cellular_componentcytoplasm
G0005975biological_processcarbohydrate metabolic process
G0005977biological_processglycogen metabolic process
G0005980biological_processglycogen catabolic process
G0008152biological_processmetabolic process
G0008184molecular_functionglycogen phosphorylase activity
G0016740molecular_functiontransferase activity
G0016757molecular_functionglycosyltransferase activity
G0030170molecular_functionpyridoxal phosphate binding
G0098723cellular_componentskeletal muscle myofibril
G0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
G0102499molecular_functionSHG alpha-glucan phosphorylase activity
H0000166molecular_functionnucleotide binding
H0003824molecular_functioncatalytic activity
H0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
H0005737cellular_componentcytoplasm
H0005975biological_processcarbohydrate metabolic process
H0005977biological_processglycogen metabolic process
H0005980biological_processglycogen catabolic process
H0008152biological_processmetabolic process
H0008184molecular_functionglycogen phosphorylase activity
H0016740molecular_functiontransferase activity
H0016757molecular_functionglycosyltransferase activity
H0030170molecular_functionpyridoxal phosphate binding
H0098723cellular_componentskeletal muscle myofibril
H0102250molecular_functionlinear malto-oligosaccharide phosphorylase activity
H0102499molecular_functionSHG alpha-glucan phosphorylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AMP A 843
ChainResidue
ATRP67
AHOH887
BASP42
BASN44
BVAL45
AGLN71
ATYR75
AARG309
AARG310
ALYS315
APHE316
AGLY317
ACYS318

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 844
ChainResidue
ASER14
AARG16
AARG69
AHOH867
BARG43

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 845
ChainResidue
AGLY135
AARG569
ALYS574
AHOH849

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AMP B 843
ChainResidue
AASP42
AASN44
AVAL45
BTRP67
BGLN71
BTYR75
BARG309
BARG310
BLYS315
BPHE316
BGLY317
BCYS318
BHOH863

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 844
ChainResidue
AARG43
BSER14
BARG16
BARG69

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 845
ChainResidue
BGLY134
BGLY135
BARG569
BLYS574

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AMP C 843
ChainResidue
CTRP67
CGLN71
CTYR75
CARG309
CARG310
DASP42
DASN44
DVAL45

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 844
ChainResidue
CGLY135
CARG569
CLYS574
CLLP680

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 845
ChainResidue
CARG43
DSER14
DARG16
DARG69

site_idBC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AMP D 843
ChainResidue
CASP42
CASN44
CVAL45
DTRP67
DGLN71
DTYR75
DARG309
DARG310
DLYS315
DGLY317
DCYS318
DHOH876
DHOH908

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 844
ChainResidue
CSER14
CARG16
CARG69
DARG43

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 845
ChainResidue
DGLY135
DARG569
DLYS574
DLLP680

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AMP E 843
ChainResidue
ETRP67
EGLN71
ETYR75
EARG309
EARG310
FASP42
FASN44
FVAL45

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 844
ChainResidue
ESER14
EARG16
EARG69
EHOH863
FARG43

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 845
ChainResidue
EGLY135
EARG569
ELLP680

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE AMP F 843
ChainResidue
FGLN71
FTYR75
FARG309
FARG310
FLYS315
FPHE316
FGLY317
FCYS318
FHOH854
EASP42
EASN44
EVAL45

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 F 844
ChainResidue
EARG43
FLYS11
FSER14
FARG16
FARG69

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 F 845
ChainResidue
FGLY135
FARG569
FLYS574
FLLP680
FHOH879

site_idCC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE AMP G 843
ChainResidue
GTRP67
GGLN71
GTYR75
GARG309
GARG310
GLYS315
GPHE316
GGLY317
GCYS318
GHOH866
HASP42
HASN44

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 844
ChainResidue
GSER14
GARG16
GARG69
HARG43

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 845
ChainResidue
GGLY135
GARG569
GLYS574
GLLP680

site_idCC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE AMP H 843
ChainResidue
GASP42
GASN44
GVAL45
HTRP67
HGLN71
HTYR75
HARG309
HARG310
HLYS315
HPHE316
HGLY317
HCYS318

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 844
ChainResidue
GARG43
HLYS11
HSER14
HARG69

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 H 899
ChainResidue
HASN133
HGLY135
HARG569

Functional Information from PROSITE/UniProt
site_idPS00102
Number of Residues13
DetailsPHOSPHORYLASE Phosphorylase pyridoxal-phosphate attachment site. EASGtGnMKfmLN
ChainResidueDetails
AGLU672-ASN684

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P11217
ChainResidueDetails
AASP42
EARG309
FASP42
FARG309
GASP42
GARG309
HASP42
HARG309
AARG309
BASP42
BARG309
CASP42
CARG309
DASP42
DARG309
EASP42

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:3616621
ChainResidueDetails
ATYR75
BTYR75
CTYR75
DTYR75
ETYR75
FTYR75
GTYR75
HTYR75

site_idSWS_FT_FI3
Number of Residues16
DetailsSITE: Involved in the association of subunits => ECO:0000303|PubMed:728424
ChainResidueDetails
ACYS108
ECYS142
FCYS108
FCYS142
GCYS108
GCYS142
HCYS108
HCYS142
ACYS142
BCYS108
BCYS142
CCYS108
CCYS142
DCYS108
DCYS142
ECYS108

site_idSWS_FT_FI4
Number of Residues8
DetailsSITE: Can be labeled by an AMP analog; may be involved in allosteric regulation => ECO:0000303|PubMed:728424
ChainResidueDetails
ATYR155
BTYR155
CTYR155
DTYR155
ETYR155
FTYR155
GTYR155
HTYR155

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N-acetylserine => ECO:0000269|PubMed:3015680
ChainResidueDetails
ASER1
BSER1
CSER1
DSER1
ESER1
FSER1
GSER1
HSER1

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: Phosphoserine; by PHK; in form phosphorylase A => ECO:0000250|UniProtKB:P11217
ChainResidueDetails
ASER14
BSER14
CSER14
DSER14
ESER14
FSER14
GSER14
HSER14

site_idSWS_FT_FI7
Number of Residues16
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P09812
ChainResidueDetails
ATYR203
ETYR226
FTYR203
FTYR226
GTYR203
GTYR226
HTYR203
HTYR226
ATYR226
BTYR203
BTYR226
CTYR203
CTYR226
DTYR203
DTYR226
ETYR203

site_idSWS_FT_FI8
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9WUB3
ChainResidueDetails
ASER429
BSER429
CSER429
DSER429
ESER429
FSER429
GSER429
HSER429

site_idSWS_FT_FI9
Number of Residues8
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q9WUB3
ChainResidueDetails
ATYR472
BTYR472
CTYR472
DTYR472
ETYR472
FTYR472
GTYR472
HTYR472

site_idSWS_FT_FI10
Number of Residues24
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P09812
ChainResidueDetails
ASER513
DSER513
DSER746
DSER747
ESER513
ESER746
ESER747
FSER513
FSER746
FSER747
GSER513
ASER746
GSER746
GSER747
HSER513
HSER746
HSER747
ASER747
BSER513
BSER746
BSER747
CSER513
CSER746
CSER747

site_idSWS_FT_FI11
Number of Residues8
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:7500360, ECO:0000269|PubMed:8976550, ECO:0007744|PDB:2PRI, ECO:0007744|PDB:2SKC, ECO:0007744|PDB:2SKD, ECO:0007744|PDB:2SKE
ChainResidueDetails
ALLP680
BLLP680
CLLP680
DLLP680
ELLP680
FLLP680
GLLP680
HLLP680

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
AHIS377electrostatic stabiliser
ALYS568electrostatic stabiliser
AARG569electrostatic stabiliser
ALYS574electrostatic stabiliser
ATHR676electrostatic stabiliser
ALLP680covalently attached

site_idMCSA2
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
BHIS377electrostatic stabiliser
BLYS568electrostatic stabiliser
BARG569electrostatic stabiliser
BLYS574electrostatic stabiliser
BTHR676electrostatic stabiliser
BLLP680covalently attached

site_idMCSA3
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
CHIS377electrostatic stabiliser
CLYS568electrostatic stabiliser
CARG569electrostatic stabiliser
CLYS574electrostatic stabiliser
CTHR676electrostatic stabiliser
CLLP680covalently attached

site_idMCSA4
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
DHIS377electrostatic stabiliser
DLYS568electrostatic stabiliser
DARG569electrostatic stabiliser
DLYS574electrostatic stabiliser
DTHR676electrostatic stabiliser
DLLP680covalently attached

site_idMCSA5
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
EHIS377electrostatic stabiliser
ELYS568electrostatic stabiliser
EARG569electrostatic stabiliser
ELYS574electrostatic stabiliser
ETHR676electrostatic stabiliser
ELLP680covalently attached

site_idMCSA6
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
FHIS377electrostatic stabiliser
FLYS568electrostatic stabiliser
FARG569electrostatic stabiliser
FLYS574electrostatic stabiliser
FTHR676electrostatic stabiliser
FLLP680covalently attached

site_idMCSA7
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
GHIS377electrostatic stabiliser
GLYS568electrostatic stabiliser
GARG569electrostatic stabiliser
GLYS574electrostatic stabiliser
GTHR676electrostatic stabiliser
GLLP680covalently attached

site_idMCSA8
Number of Residues6
DetailsM-CSA 205
ChainResidueDetails
HHIS377electrostatic stabiliser
HLYS568electrostatic stabiliser
HARG569electrostatic stabiliser
HLYS574electrostatic stabiliser
HTHR676electrostatic stabiliser
HLLP680covalently attached

218853

PDB entries from 2024-04-24

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