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3DMH

T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet and Guanosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003676molecular_functionnucleic acid binding
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008170molecular_functionN-methyltransferase activity
A0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 382
ChainResidue
ATHR4
AARG5
ALYS353
AHOH443
AHOH528

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 383
ChainResidue
AGLY112
AARG113
AHOH491
AHOH515
AHOH551
AARG28
AASN53
APRO110
AALA111

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE SAM A 384
ChainResidue
ATYR8
APHE207
ASER216
AGLY241
AALA242
AGLY243
AALA246
AGLU262
AASP263
ASER287
AASP288
AASN305
APRO306
AHOH392
AHOH393
AHOH396
AHOH398
AHOH400
AHOH402
AHOH525
AHOH644
AHOH781

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GMP A 385
ChainResidue
AASP213
AALA215
AASN305
APHE308
AASN341
ALEU344
ATYR365
AHOH403
AHOH454
AHOH549
AHOH616

Functional Information from PROSITE/UniProt
site_idPS00092
Number of Residues7
DetailsN6_MTASE N-6 Adenine-specific DNA methylases signature. IVTNPPF
ChainResidueDetails
AILE302-PHE308

site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLDlGAGyGaLTlplArmgae...VvGVEdD
ChainResidueDetails
AVAL237-ASP264

218853

PDB entries from 2024-04-24

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