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3DKD

Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with GDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GDP A 143
ChainResidue
ALYS9
AGLY111
AASN113
ATYR50
AHIS53
ATYR58
ALEU62
AARG86
ATHR92
AARG103
AILE110

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GDP B 143
ChainResidue
BLYS9
BTYR50
BHIS53
BTYR58
BLEU62
BARG86
BTHR92
BARG103
BILE110
BGLY111
BASN113

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
ChainResidueDetails
AHIS116
BHIS116

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS9
BASN113
ATYR58
AARG86
AARG103
AASN113
BLYS9
BTYR58
BARG86
BARG103

218853

PDB entries from 2024-04-24

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