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3DJO

Bovine Seminal Ribonuclease uridine 2' phosphate complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004519molecular_functionendonuclease activity
A0004522molecular_functionribonuclease A activity
A0004540molecular_functionRNA nuclease activity
A0005576cellular_componentextracellular region
A0016829molecular_functionlyase activity
A0042802molecular_functionidentical protein binding
A0050830biological_processdefense response to Gram-positive bacterium
A0051607biological_processdefense response to virus
B0003676molecular_functionnucleic acid binding
B0004519molecular_functionendonuclease activity
B0004522molecular_functionribonuclease A activity
B0004540molecular_functionRNA nuclease activity
B0005576cellular_componentextracellular region
B0016829molecular_functionlyase activity
B0042802molecular_functionidentical protein binding
B0050830biological_processdefense response to Gram-positive bacterium
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT B 301
ChainResidue
ALYS41
AHIS119
APHE120
BGLN11
BHIS12
BHOH417

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 302
ChainResidue
AASN27
BCYS32
BARG33

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE U2P A 125
ChainResidue
AASN44
ATHR45
ALYS62
ALYS66
AARG85
APHE120
AASP121
AHOH142
AHOH143
AHOH144
AHOH186
AHOH196
AHOH251
AHOH252
AHOH253
BHIS12

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE U2P B 201
ChainResidue
AGLN11
AHIS12
AHOH278
BLYS41
BVAL43
BASN44
BTHR45
BHIS119
BPHE120
BHOH386
BHOH387
BHOH389
BHOH390

Functional Information from PROSITE/UniProt
site_idPS00127
Number of Residues7
DetailsRNASE_PANCREATIC Pancreatic ribonuclease family signature. CKpvNTF
ChainResidueDetails
ACYS40-PHE46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AHIS12
BHIS12

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
AHIS119
BHIS119

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS7
BARG85
AARG10
ALYS41
ALYS66
AARG85
BLYS7
BARG10
BLYS41
BLYS66

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Deamidated asparagine; by deterioration => ECO:0000269|PubMed:2057997
ChainResidueDetails
AASN67
BASN67

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
APHE120
AHIS119
AHIS12
ALYS41

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
BPHE120
BHIS119
BHIS12
BLYS41

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
AHIS119
AHIS12
ALYS41

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
BHIS119
BHIS12
BLYS41

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PDB entries from 2024-06-26

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