Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DE8

Crystal Structure of a Dimeric Cytochrome cb562 Assembly Induced by Copper Coordination

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0009055molecular_functionelectron transfer activity
A0020037molecular_functionheme binding
A0022900biological_processelectron transport chain
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0005506molecular_functioniron ion binding
B0009055molecular_functionelectron transfer activity
B0020037molecular_functionheme binding
B0022900biological_processelectron transport chain
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
C0005506molecular_functioniron ion binding
C0009055molecular_functionelectron transfer activity
C0020037molecular_functionheme binding
C0022900biological_processelectron transport chain
C0042597cellular_componentperiplasmic space
C0046872molecular_functionmetal ion binding
D0005506molecular_functioniron ion binding
D0009055molecular_functionelectron transfer activity
D0020037molecular_functionheme binding
D0022900biological_processelectron transport chain
D0042597cellular_componentperiplasmic space
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A 107
ChainResidue
AHIS59
AHIS63
DHIS73
DHIS77
DHOH151

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A 108
ChainResidue
DHOH152
AHIS73
AHIS77
DHIS59
DHIS63

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 109
ChainResidue
AASP74
AHOH151
AHOH152
CASP74
CHOH313
CHOH314

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 110
ChainResidue
AGLU8
AASP12
AHOH153
AHOH154
AHOH155

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 111
ChainResidue
AHOH200
AHOH217
AHOH228
AHOH278
AHOH292

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU B 107
ChainResidue
BHIS59
BHIS63
CHIS73
CHIS77
CHOH312

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU B 108
ChainResidue
BHIS73
BHIS77
BHOH253
CHIS59
CHIS63

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 109
ChainResidue
AALA1
AASP39
BGLU4
BASP5
BHOH254
BHOH255

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 110
ChainResidue
AASP39
BASP2
BGLU4
BASP5
BHOH256
BHOH257

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 107
ChainResidue
CLYS19
CASP21
CHOH315
CHOH316

site_idBC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE HEM A 150
ChainResidue
AMET7
AMET33
APRO45
APRO46
APHE61
APHE65
ACYS98
ACYS101
AHIS102
AARG106
AHOH258
AHOH301

site_idBC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEM B 150
ChainResidue
AALA1
AHOH294
BLEU3
BMET7
BGLU8
BPRO45
BPRO46
BPHE61
BPHE65
BCYS98
BCYS101
BHIS102
BTYR105
BARG106
BHOH264

site_idBC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEM C 150
ChainResidue
CGLU4
CMET7
CPRO45
CPRO46
CPHE61
CPHE65
CCYS98
CCYS101
CHIS102
CTYR105
CARG106
CHOH331
CHOH342
CHOH404
CHOH429

site_idBC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE HEM D 150
ChainResidue
DPHE61
DGLY64
DPHE65
DCYS98
DCYS101
DHIS102
DTYR105
DARG106
DHOH218
DGLU4
DMET7
DGLU8
DPRO45
DPRO46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: axial binding residue
ChainResidueDetails
AMET7
AHIS102
BMET7
BHIS102
CMET7
CHIS102
DMET7
DHIS102

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon