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3D9O

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data
ChainGOidnamespacecontents
A0000993molecular_functionRNA polymerase II complex binding
A0003729molecular_functionmRNA binding
A0006369biological_processtermination of RNA polymerase II transcription
A0006378biological_processmRNA polyadenylation
A0006379biological_processmRNA cleavage
B0000993molecular_functionRNA polymerase II complex binding
B0003729molecular_functionmRNA binding
B0006369biological_processtermination of RNA polymerase II transcription
B0006378biological_processmRNA polyadenylation
B0006379biological_processmRNA cleavage
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NH4 A 401
ChainResidue
AILE37
ASER73
APHE77
ALYS81
AASP82

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 B 402
ChainResidue
BILE37
BSER73
BPHE77
BASP82

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 500
ChainResidue
ATYR40
AARG87
AASN90

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 501
ChainResidue
ALYS41
AARG87

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 502
ChainResidue
ALEU116
AASN120
BHIS140

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 504
ChainResidue
BTYR40
BARG87
BASN90

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 505
ChainResidue
BLYS41
BARG87

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 Z 507
ChainResidue
BARG71
ZPRO6
ZSER7

Functional Information from PROSITE/UniProt
site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS
ChainResidueDetails
ZTYR-6-SER0
ZTYR1-SER7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20388717","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsRepeat: {"description":"30","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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