3D9O

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000993	molecular_function	RNA polymerase II complex binding
A	0003729	molecular_function	mRNA binding
A	0006369	biological_process	termination of RNA polymerase II transcription
A	0006378	biological_process	mRNA polyadenylation
A	0006379	biological_process	mRNA cleavage
B	0000993	molecular_function	RNA polymerase II complex binding
B	0003729	molecular_function	mRNA binding
B	0006369	biological_process	termination of RNA polymerase II transcription
B	0006378	biological_process	mRNA polyadenylation
B	0006379	biological_process	mRNA cleavage

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NH4 A 401

Chain	Residue
A	ILE37
A	SER73
A	PHE77
A	LYS81
A	ASP82

---

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE NH4 B 402

Chain	Residue
B	ILE37
B	SER73
B	PHE77
B	ASP82

---

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 500

Chain	Residue
A	TYR40
A	ARG87
A	ASN90

---

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 501

Chain	Residue
A	LYS41
A	ARG87

---

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 502

Chain	Residue
A	LEU116
A	ASN120
B	HIS140

---

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 B 504

Chain	Residue
B	TYR40
B	ARG87
B	ASN90

---

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 B 505

Chain	Residue
B	LYS41
B	ARG87

---

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 Z 507

Chain	Residue
B	ARG71
Z	PRO6
Z	SER7

---

Functional Information from PROSITE/UniProt

site_id	PS00115
Number of Residues	7
Details	RNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS

Chain	Residue	Details
Z	TYR-6-SER0
Z	TYR1-SER7

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20388717","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)"}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	6
Details	Repeat: {"description":"30","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---