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3D9N

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data
ChainGOidnamespacecontents
A0000993molecular_functionRNA polymerase II complex binding
A0003729molecular_functionmRNA binding
A0006369biological_processtermination of RNA polymerase II transcription
A0006378biological_processmRNA polyadenylation
A0006379biological_processmRNA cleavage
B0000993molecular_functionRNA polymerase II complex binding
B0003729molecular_functionmRNA binding
B0006369biological_processtermination of RNA polymerase II transcription
B0006378biological_processmRNA polyadenylation
B0006379biological_processmRNA cleavage
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1004
ChainResidue
ALYS35
AASN91
ASER94

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1007
ChainResidue
BTYR40
BARG87
BASN90

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 1008
ChainResidue
BLYS41
BARG87

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1009
ChainResidue
BASN91
BSER94
BLYS35

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1010
ChainResidue
AGLN72
AHIS75
AGLN97
AARG101

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1111
ChainResidue
ALYS81
BTYR64
BLYS109

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1112
ChainResidue
APRO20
ATYR64
ALYS109
YTYR1

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 1113
ChainResidue
ALYS41
AARG87

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1114
ChainResidue
ATYR40
ALYS41
AARG87
AASN90

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1115
ChainResidue
AARG71
ALEU116
AASN120
BALA136
BHIS140
YPRO3

Functional Information from PROSITE/UniProt
site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS
ChainResidueDetails
YTYR-6-SEP0
YTYR1-SEP7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:20388717
ChainResidueDetails
ATHR6
BTHR6

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)
ChainResidueDetails
ALYS18
BLYS18

237992

PDB entries from 2025-06-25

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