3D9K

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000993	molecular_function	RNA polymerase II complex binding
A	0003729	molecular_function	mRNA binding
A	0006369	biological_process	termination of RNA polymerase II transcription
A	0006378	biological_process	mRNA polyadenylation
A	0006379	biological_process	mRNA cleavage
B	0000993	molecular_function	RNA polymerase II complex binding
B	0003729	molecular_function	mRNA binding
B	0006369	biological_process	termination of RNA polymerase II transcription
B	0006378	biological_process	mRNA polyadenylation
B	0006379	biological_process	mRNA cleavage

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 1001

Chain	Residue
A	TYR40
A	LYS41
A	ARG87
A	ASN90

---

site_id	AC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 B 1002

Chain	Residue
B	TYR40
B	ARG87
B	ASN90

---

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 1003

Chain	Residue
A	LYS41
A	ARG87

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site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 1004

Chain	Residue
A	ARG71
A	LEU116
A	ASN120
B	HIS140

---

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 Z 1006

Chain	Residue
B	ARG71
Z	PRO6
Z	SER7

---

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 B 1007

Chain	Residue
A	LYS81
B	PRO20
B	TYR64
B	LYS109

---

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 1008

Chain	Residue
A	GLY78
A	GLN79

---

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 1010

Chain	Residue
A	LYS124
A	SER125

---

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 B 1012

Chain	Residue
B	LYS41
B	ARG87

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Functional Information from PROSITE/UniProt

site_id	PS00115
Number of Residues	7
Details	RNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS

Chain	Residue	Details
Y	TYR-6-SER0
Y	TYR1-SER7

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20388717","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)"}

Chain

Residue

Details

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