3D59
Crystal structure of human plasma platelet activating factor acetylhydrolase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003847 | molecular_function | 1-alkyl-2-acetylglycerophosphocholine esterase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005543 | molecular_function | phospholipid binding |
A | 0005576 | cellular_component | extracellular region |
A | 0009395 | biological_process | phospholipid catabolic process |
A | 0016486 | biological_process | peptide hormone processing |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
A | 0034362 | cellular_component | low-density lipoprotein particle |
A | 0034364 | cellular_component | high-density lipoprotein particle |
A | 0034374 | biological_process | low-density lipoprotein particle remodeling |
A | 0034440 | biological_process | lipid oxidation |
A | 0034441 | biological_process | plasma lipoprotein particle oxidation |
A | 0034638 | biological_process | phosphatidylcholine catabolic process |
A | 0046469 | biological_process | platelet activating factor metabolic process |
A | 0047499 | molecular_function | calcium-independent phospholipase A2 activity |
A | 0050729 | biological_process | positive regulation of inflammatory response |
A | 0062234 | biological_process | platelet activating factor catabolic process |
A | 0090026 | biological_process | positive regulation of monocyte chemotaxis |
B | 0003847 | molecular_function | 1-alkyl-2-acetylglycerophosphocholine esterase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005543 | molecular_function | phospholipid binding |
B | 0005576 | cellular_component | extracellular region |
B | 0009395 | biological_process | phospholipid catabolic process |
B | 0016486 | biological_process | peptide hormone processing |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
B | 0034362 | cellular_component | low-density lipoprotein particle |
B | 0034364 | cellular_component | high-density lipoprotein particle |
B | 0034374 | biological_process | low-density lipoprotein particle remodeling |
B | 0034440 | biological_process | lipid oxidation |
B | 0034441 | biological_process | plasma lipoprotein particle oxidation |
B | 0034638 | biological_process | phosphatidylcholine catabolic process |
B | 0046469 | biological_process | platelet activating factor metabolic process |
B | 0047499 | molecular_function | calcium-independent phospholipase A2 activity |
B | 0050729 | biological_process | positive regulation of inflammatory response |
B | 0062234 | biological_process | platelet activating factor catabolic process |
B | 0090026 | biological_process | positive regulation of monocyte chemotaxis |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE ACT A 11 |
Chain | Residue |
A | ACT15 |
A | LYS143 |
A | HIS241 |
A | ARG264 |
A | HOH476 |
B | SER308 |
B | ARG309 |
B | PRO311 |
B | LYS339 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT A 12 |
Chain | Residue |
A | SER230 |
A | GLN231 |
A | SER234 |
A | HOH494 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACT A 15 |
Chain | Residue |
A | ACT11 |
A | LYS143 |
A | ILE262 |
A | ASP263 |
A | ARG264 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACT A 16 |
Chain | Residue |
A | ACT28 |
A | SER202 |
A | TRP203 |
B | TYR189 |
B | LYS191 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACT A 19 |
Chain | Residue |
A | HIS74 |
A | ASP192 |
A | GLN193 |
A | HOH662 |
A | HOH713 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE ACT A 20 |
Chain | Residue |
A | VAL245 |
A | LYS246 |
A | ASN247 |
A | PHE253 |
A | MET255 |
A | HOH490 |
A | HOH495 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT A 22 |
Chain | Residue |
A | PHE72 |
A | HOH481 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT A 24 |
Chain | Residue |
A | LEU124 |
A | THR361 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT A 25 |
Chain | Residue |
A | TRP298 |
A | TYR324 |
A | HOH446 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ACT A 28 |
Chain | Residue |
A | ACT16 |
A | LYS191 |
A | HOH534 |
B | TYR189 |
B | LYS191 |
B | HOH548 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT A 29 |
Chain | Residue |
A | GLU305 |
A | SER308 |
A | ARG309 |
B | ASP260 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACT A 30 |
Chain | Residue |
A | LYS246 |
site_id | BC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT A 32 |
Chain | Residue |
A | LYS394 |
A | HIS395 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ACT A 33 |
Chain | Residue |
A | PRO57 |
A | ARG58 |
A | ASN378 |
A | HOH548 |
A | HOH566 |
A | HOH711 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT A 35 |
Chain | Residue |
A | ASN378 |
A | VAL379 |
A | ASP382 |
A | HOH510 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT A 36 |
Chain | Residue |
A | ARG182 |
A | HOH555 |
A | HOH700 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE ACT A 39 |
Chain | Residue |
A | ASP338 |
A | GLU410 |
A | ASP412 |
A | PRO418 |
A | HOH542 |
A | HOH635 |
A | HOH710 |
site_id | BC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 1 |
Chain | Residue |
A | LYS101 |
A | LYS201 |
B | ARG182 |
B | ARG207 |
B | HOH471 |
B | HOH482 |
B | HOH490 |
B | HOH496 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 B 2 |
Chain | Residue |
A | ASP89 |
A | ASN90 |
B | ASN100 |
B | LYS101 |
B | HOH521 |
B | HOH634 |
site_id | CC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 13 |
Chain | Residue |
B | TRP134 |
B | LEU251 |
B | HOH518 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACT B 14 |
Chain | Residue |
B | TYR321 |
B | PHE322 |
B | VAL350 |
B | HIS351 |
B | HOH449 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 17 |
Chain | Residue |
B | SER234 |
B | SER230 |
B | GLN231 |
site_id | CC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 18 |
Chain | Residue |
B | LYS266 |
B | LEU398 |
B | HIS399 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT B 21 |
Chain | Residue |
B | TRP298 |
B | PHE300 |
B | TYR324 |
B | HOH441 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT B 23 |
Chain | Residue |
B | LEU107 |
B | PHE357 |
site_id | CC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 26 |
Chain | Residue |
A | LYS259 |
A | HOH679 |
B | ARG309 |
site_id | CC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 27 |
Chain | Residue |
B | HIS74 |
B | ASP192 |
B | GLN193 |
site_id | DC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACT B 31 |
Chain | Residue |
B | HOH593 |
site_id | DC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACT B 34 |
Chain | Residue |
B | PHE110 |
site_id | DC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT B 37 |
Chain | Residue |
A | LYS370 |
A | HOH620 |
B | ILE329 |
B | HOH639 |
site_id | DC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 38 |
Chain | Residue |
B | PRO140 |
B | ASP412 |
B | HOH594 |
Functional Information from PROSITE/UniProt
site_id | PS00120 |
Number of Residues | 10 |
Details | LIPASE_SER Lipases, serine active site. IAVIGHSFGG |
Chain | Residue | Details |
A | ILE267-GLY276 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:18784071 |
Chain | Residue | Details |
A | SER273 | |
B | SER273 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU10037, ECO:0000269|PubMed:18784071 |
Chain | Residue | Details |
A | ASP296 | |
A | HIS351 | |
B | ASP296 | |
B | HIS351 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255 |
Chain | Residue | Details |
A | ASN423 | |
B | ASN423 |