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3D52

GOLGI MANNOSIDASE II complex with an N-aryl carbamate derivative of gluco-hydroxyiminolactam

Functional Information from GO Data
ChainGOidnamespacecontents
A0000139cellular_componentGolgi membrane
A0003824molecular_functioncatalytic activity
A0004559molecular_functionalpha-mannosidase activity
A0004572molecular_functionmannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity
A0005783cellular_componentendoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0005795cellular_componentGolgi stack
A0005975biological_processcarbohydrate metabolic process
A0006013biological_processmannose metabolic process
A0006486biological_processprotein glycosylation
A0006491biological_processN-glycan processing
A0015923molecular_functionmannosidase activity
A0016020cellular_componentmembrane
A0016063biological_processrhodopsin biosynthetic process
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0030246molecular_functioncarbohydrate binding
A0035010biological_processencapsulation of foreign target
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1046
ChainResidue
AHIS90
AASP92
AASP204
AHIS471

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MRD A 1047
ChainResidue
AHOH1160
AHOH1164
AHOH1714
ALYS63
AGLN64
ATYR267
AHIS273
AHOH1158

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE GHR A 1048
ChainResidue
AHIS90
AASP92
ATRP95
AASP204
APHE206
AARG228
ATYR269
AASP341
AHIS471
AASP472
ATYR727
AARG876
AHOH1307
AHOH1309
AHOH1760

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000250
ChainResidueDetails
AASP204

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS90
AASP92
AASP204
AHIS471

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 793
ChainResidueDetails
AHIS90metal ligand
AASP92metal ligand
AASP204covalently attached, metal ligand, nucleofuge, nucleophile
AASP341activator, increase nucleophilicity, proton acceptor, proton donor
AHIS471metal ligand

227344

PDB entries from 2024-11-13

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