3CUE

Crystal structure of a TRAPP subassembly activating the Rab Ypt1p

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000407	cellular_component	phagophore assembly site
A	0005085	molecular_function	guanyl-nucleotide exchange factor activity
A	0005515	molecular_function	protein binding
A	0005783	cellular_component	endoplasmic reticulum
A	0005794	cellular_component	Golgi apparatus
A	0005829	cellular_component	cytosol
A	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
A	0006891	biological_process	intra-Golgi vesicle-mediated transport
A	0006914	biological_process	autophagy
A	0016192	biological_process	vesicle-mediated transport
A	0016236	biological_process	macroautophagy
A	0030008	cellular_component	TRAPP complex
A	0032991	cellular_component	protein-containing complex
A	0042147	biological_process	retrograde transport, endosome to Golgi
A	0048193	biological_process	Golgi vesicle transport
A	0051276	biological_process	chromosome organization
A	1990070	cellular_component	TRAPPI protein complex
A	1990071	cellular_component	TRAPPII protein complex
A	1990072	cellular_component	TRAPPIII protein complex
B	0000407	cellular_component	phagophore assembly site
B	0005085	molecular_function	guanyl-nucleotide exchange factor activity
B	0005515	molecular_function	protein binding
B	0005783	cellular_component	endoplasmic reticulum
B	0005794	cellular_component	Golgi apparatus
B	0005829	cellular_component	cytosol
B	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
B	0006891	biological_process	intra-Golgi vesicle-mediated transport
B	0006914	biological_process	autophagy
B	0016192	biological_process	vesicle-mediated transport
B	0016236	biological_process	macroautophagy
B	0030008	cellular_component	TRAPP complex
B	0042147	biological_process	retrograde transport, endosome to Golgi
B	0048193	biological_process	Golgi vesicle transport
B	1990070	cellular_component	TRAPPI protein complex
B	1990071	cellular_component	TRAPPII protein complex
B	1990072	cellular_component	TRAPPIII protein complex
C	0000407	cellular_component	phagophore assembly site
C	0005085	molecular_function	guanyl-nucleotide exchange factor activity
C	0005515	molecular_function	protein binding
C	0005783	cellular_component	endoplasmic reticulum
C	0005794	cellular_component	Golgi apparatus
C	0005829	cellular_component	cytosol
C	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
C	0006891	biological_process	intra-Golgi vesicle-mediated transport
C	0006914	biological_process	autophagy
C	0016192	biological_process	vesicle-mediated transport
C	0016236	biological_process	macroautophagy
C	0030008	cellular_component	TRAPP complex
C	0032991	cellular_component	protein-containing complex
C	0042147	biological_process	retrograde transport, endosome to Golgi
C	0048193	biological_process	Golgi vesicle transport
C	1990070	cellular_component	TRAPPI protein complex
C	1990071	cellular_component	TRAPPII protein complex
C	1990072	cellular_component	TRAPPIII protein complex
D	0000407	cellular_component	phagophore assembly site
D	0005085	molecular_function	guanyl-nucleotide exchange factor activity
D	0005515	molecular_function	protein binding
D	0005783	cellular_component	endoplasmic reticulum
D	0005794	cellular_component	Golgi apparatus
D	0005829	cellular_component	cytosol
D	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
D	0006891	biological_process	intra-Golgi vesicle-mediated transport
D	0006914	biological_process	autophagy
D	0006995	biological_process	cellular response to nitrogen starvation
D	0016192	biological_process	vesicle-mediated transport
D	0016236	biological_process	macroautophagy
D	0030008	cellular_component	TRAPP complex
D	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
D	0033106	cellular_component	cis-Golgi network membrane
D	0042147	biological_process	retrograde transport, endosome to Golgi
D	0048193	biological_process	Golgi vesicle transport
D	1990070	cellular_component	TRAPPI protein complex
D	1990071	cellular_component	TRAPPII protein complex
D	1990072	cellular_component	TRAPPIII protein complex
E	0000407	cellular_component	phagophore assembly site
E	0005085	molecular_function	guanyl-nucleotide exchange factor activity
E	0005515	molecular_function	protein binding
E	0005783	cellular_component	endoplasmic reticulum
E	0005794	cellular_component	Golgi apparatus
E	0005829	cellular_component	cytosol
E	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
E	0006891	biological_process	intra-Golgi vesicle-mediated transport
E	0006914	biological_process	autophagy
E	0006995	biological_process	cellular response to nitrogen starvation
E	0016192	biological_process	vesicle-mediated transport
E	0016236	biological_process	macroautophagy
E	0030008	cellular_component	TRAPP complex
E	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
E	0033106	cellular_component	cis-Golgi network membrane
E	0042147	biological_process	retrograde transport, endosome to Golgi
E	0048193	biological_process	Golgi vesicle transport
E	1990070	cellular_component	TRAPPI protein complex
E	1990071	cellular_component	TRAPPII protein complex
E	1990072	cellular_component	TRAPPIII protein complex
F	0000045	biological_process	autophagosome assembly
F	0000139	cellular_component	Golgi membrane
F	0000149	molecular_function	SNARE binding
F	0000166	molecular_function	nucleotide binding
F	0000407	cellular_component	phagophore assembly site
F	0003924	molecular_function	GTPase activity
F	0005515	molecular_function	protein binding
F	0005525	molecular_function	GTP binding
F	0005737	cellular_component	cytoplasm
F	0005739	cellular_component	mitochondrion
F	0005789	cellular_component	endoplasmic reticulum membrane
F	0005795	cellular_component	Golgi stack
F	0005801	cellular_component	cis-Golgi network
F	0005829	cellular_component	cytosol
F	0006886	biological_process	intracellular protein transport
F	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
F	0006890	biological_process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
F	0006914	biological_process	autophagy
F	0012505	cellular_component	endomembrane system
F	0015031	biological_process	protein transport
F	0016192	biological_process	vesicle-mediated transport
F	0016236	biological_process	macroautophagy
F	0031410	cellular_component	cytoplasmic vesicle
F	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
F	0032456	biological_process	endocytic recycling
F	0034045	cellular_component	phagophore assembly site membrane
F	0034497	biological_process	protein localization to phagophore assembly site
F	0034498	biological_process	early endosome to Golgi transport
F	0035493	biological_process	SNARE complex assembly
F	0035494	biological_process	SNARE complex disassembly
F	0048194	biological_process	Golgi vesicle budding
F	0048211	biological_process	Golgi vesicle docking
F	0061709	biological_process	reticulophagy
F	0090114	biological_process	COPII-coated vesicle budding
F	1900101	biological_process	regulation of endoplasmic reticulum unfolded protein response
F	1990261	biological_process	pre-mRNA catabolic process
G	0000407	cellular_component	phagophore assembly site
G	0005085	molecular_function	guanyl-nucleotide exchange factor activity
G	0005515	molecular_function	protein binding
G	0005783	cellular_component	endoplasmic reticulum
G	0005794	cellular_component	Golgi apparatus
G	0005829	cellular_component	cytosol
G	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
G	0006891	biological_process	intra-Golgi vesicle-mediated transport
G	0006914	biological_process	autophagy
G	0016192	biological_process	vesicle-mediated transport
G	0016236	biological_process	macroautophagy
G	0030008	cellular_component	TRAPP complex
G	0032991	cellular_component	protein-containing complex
G	0042147	biological_process	retrograde transport, endosome to Golgi
G	0048193	biological_process	Golgi vesicle transport
G	0051276	biological_process	chromosome organization
G	1990070	cellular_component	TRAPPI protein complex
G	1990071	cellular_component	TRAPPII protein complex
G	1990072	cellular_component	TRAPPIII protein complex
H	0000407	cellular_component	phagophore assembly site
H	0005085	molecular_function	guanyl-nucleotide exchange factor activity
H	0005515	molecular_function	protein binding
H	0005783	cellular_component	endoplasmic reticulum
H	0005794	cellular_component	Golgi apparatus
H	0005829	cellular_component	cytosol
H	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
H	0006891	biological_process	intra-Golgi vesicle-mediated transport
H	0006914	biological_process	autophagy
H	0016192	biological_process	vesicle-mediated transport
H	0016236	biological_process	macroautophagy
H	0030008	cellular_component	TRAPP complex
H	0042147	biological_process	retrograde transport, endosome to Golgi
H	0048193	biological_process	Golgi vesicle transport
H	1990070	cellular_component	TRAPPI protein complex
H	1990071	cellular_component	TRAPPII protein complex
H	1990072	cellular_component	TRAPPIII protein complex
I	0000407	cellular_component	phagophore assembly site
I	0005085	molecular_function	guanyl-nucleotide exchange factor activity
I	0005515	molecular_function	protein binding
I	0005783	cellular_component	endoplasmic reticulum
I	0005794	cellular_component	Golgi apparatus
I	0005829	cellular_component	cytosol
I	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
I	0006891	biological_process	intra-Golgi vesicle-mediated transport
I	0006914	biological_process	autophagy
I	0016192	biological_process	vesicle-mediated transport
I	0016236	biological_process	macroautophagy
I	0030008	cellular_component	TRAPP complex
I	0032991	cellular_component	protein-containing complex
I	0042147	biological_process	retrograde transport, endosome to Golgi
I	0048193	biological_process	Golgi vesicle transport
I	1990070	cellular_component	TRAPPI protein complex
I	1990071	cellular_component	TRAPPII protein complex
I	1990072	cellular_component	TRAPPIII protein complex
J	0000407	cellular_component	phagophore assembly site
J	0005085	molecular_function	guanyl-nucleotide exchange factor activity
J	0005515	molecular_function	protein binding
J	0005783	cellular_component	endoplasmic reticulum
J	0005794	cellular_component	Golgi apparatus
J	0005829	cellular_component	cytosol
J	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
J	0006891	biological_process	intra-Golgi vesicle-mediated transport
J	0006914	biological_process	autophagy
J	0006995	biological_process	cellular response to nitrogen starvation
J	0016192	biological_process	vesicle-mediated transport
J	0016236	biological_process	macroautophagy
J	0030008	cellular_component	TRAPP complex
J	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
J	0033106	cellular_component	cis-Golgi network membrane
J	0042147	biological_process	retrograde transport, endosome to Golgi
J	0048193	biological_process	Golgi vesicle transport
J	1990070	cellular_component	TRAPPI protein complex
J	1990071	cellular_component	TRAPPII protein complex
J	1990072	cellular_component	TRAPPIII protein complex
K	0000407	cellular_component	phagophore assembly site
K	0005085	molecular_function	guanyl-nucleotide exchange factor activity
K	0005515	molecular_function	protein binding
K	0005783	cellular_component	endoplasmic reticulum
K	0005794	cellular_component	Golgi apparatus
K	0005829	cellular_component	cytosol
K	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
K	0006891	biological_process	intra-Golgi vesicle-mediated transport
K	0006914	biological_process	autophagy
K	0006995	biological_process	cellular response to nitrogen starvation
K	0016192	biological_process	vesicle-mediated transport
K	0016236	biological_process	macroautophagy
K	0030008	cellular_component	TRAPP complex
K	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
K	0033106	cellular_component	cis-Golgi network membrane
K	0042147	biological_process	retrograde transport, endosome to Golgi
K	0048193	biological_process	Golgi vesicle transport
K	1990070	cellular_component	TRAPPI protein complex
K	1990071	cellular_component	TRAPPII protein complex
K	1990072	cellular_component	TRAPPIII protein complex
L	0000045	biological_process	autophagosome assembly
L	0000139	cellular_component	Golgi membrane
L	0000149	molecular_function	SNARE binding
L	0000166	molecular_function	nucleotide binding
L	0000407	cellular_component	phagophore assembly site
L	0003924	molecular_function	GTPase activity
L	0005515	molecular_function	protein binding
L	0005525	molecular_function	GTP binding
L	0005737	cellular_component	cytoplasm
L	0005739	cellular_component	mitochondrion
L	0005789	cellular_component	endoplasmic reticulum membrane
L	0005795	cellular_component	Golgi stack
L	0005801	cellular_component	cis-Golgi network
L	0005829	cellular_component	cytosol
L	0006886	biological_process	intracellular protein transport
L	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
L	0006890	biological_process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
L	0006914	biological_process	autophagy
L	0012505	cellular_component	endomembrane system
L	0015031	biological_process	protein transport
L	0016192	biological_process	vesicle-mediated transport
L	0016236	biological_process	macroautophagy
L	0031410	cellular_component	cytoplasmic vesicle
L	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
L	0032456	biological_process	endocytic recycling
L	0034045	cellular_component	phagophore assembly site membrane
L	0034497	biological_process	protein localization to phagophore assembly site
L	0034498	biological_process	early endosome to Golgi transport
L	0035493	biological_process	SNARE complex assembly
L	0035494	biological_process	SNARE complex disassembly
L	0048194	biological_process	Golgi vesicle budding
L	0048211	biological_process	Golgi vesicle docking
L	0061709	biological_process	reticulophagy
L	0090114	biological_process	COPII-coated vesicle budding
L	1900101	biological_process	regulation of endoplasmic reticulum unfolded protein response
L	1990261	biological_process	pre-mRNA catabolic process
M	0000407	cellular_component	phagophore assembly site
M	0005085	molecular_function	guanyl-nucleotide exchange factor activity
M	0005515	molecular_function	protein binding
M	0005783	cellular_component	endoplasmic reticulum
M	0005794	cellular_component	Golgi apparatus
M	0005829	cellular_component	cytosol
M	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
M	0006891	biological_process	intra-Golgi vesicle-mediated transport
M	0006914	biological_process	autophagy
M	0016192	biological_process	vesicle-mediated transport
M	0016236	biological_process	macroautophagy
M	0030008	cellular_component	TRAPP complex
M	0032991	cellular_component	protein-containing complex
M	0042147	biological_process	retrograde transport, endosome to Golgi
M	0048193	biological_process	Golgi vesicle transport
M	0051276	biological_process	chromosome organization
M	1990070	cellular_component	TRAPPI protein complex
M	1990071	cellular_component	TRAPPII protein complex
M	1990072	cellular_component	TRAPPIII protein complex
N	0000407	cellular_component	phagophore assembly site
N	0005085	molecular_function	guanyl-nucleotide exchange factor activity
N	0005515	molecular_function	protein binding
N	0005783	cellular_component	endoplasmic reticulum
N	0005794	cellular_component	Golgi apparatus
N	0005829	cellular_component	cytosol
N	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
N	0006891	biological_process	intra-Golgi vesicle-mediated transport
N	0006914	biological_process	autophagy
N	0016192	biological_process	vesicle-mediated transport
N	0016236	biological_process	macroautophagy
N	0030008	cellular_component	TRAPP complex
N	0042147	biological_process	retrograde transport, endosome to Golgi
N	0048193	biological_process	Golgi vesicle transport
N	1990070	cellular_component	TRAPPI protein complex
N	1990071	cellular_component	TRAPPII protein complex
N	1990072	cellular_component	TRAPPIII protein complex
O	0000407	cellular_component	phagophore assembly site
O	0005085	molecular_function	guanyl-nucleotide exchange factor activity
O	0005515	molecular_function	protein binding
O	0005783	cellular_component	endoplasmic reticulum
O	0005794	cellular_component	Golgi apparatus
O	0005829	cellular_component	cytosol
O	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
O	0006891	biological_process	intra-Golgi vesicle-mediated transport
O	0006914	biological_process	autophagy
O	0016192	biological_process	vesicle-mediated transport
O	0016236	biological_process	macroautophagy
O	0030008	cellular_component	TRAPP complex
O	0032991	cellular_component	protein-containing complex
O	0042147	biological_process	retrograde transport, endosome to Golgi
O	0048193	biological_process	Golgi vesicle transport
O	1990070	cellular_component	TRAPPI protein complex
O	1990071	cellular_component	TRAPPII protein complex
O	1990072	cellular_component	TRAPPIII protein complex
P	0000407	cellular_component	phagophore assembly site
P	0005085	molecular_function	guanyl-nucleotide exchange factor activity
P	0005515	molecular_function	protein binding
P	0005783	cellular_component	endoplasmic reticulum
P	0005794	cellular_component	Golgi apparatus
P	0005829	cellular_component	cytosol
P	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
P	0006891	biological_process	intra-Golgi vesicle-mediated transport
P	0006914	biological_process	autophagy
P	0006995	biological_process	cellular response to nitrogen starvation
P	0016192	biological_process	vesicle-mediated transport
P	0016236	biological_process	macroautophagy
P	0030008	cellular_component	TRAPP complex
P	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
P	0033106	cellular_component	cis-Golgi network membrane
P	0042147	biological_process	retrograde transport, endosome to Golgi
P	0048193	biological_process	Golgi vesicle transport
P	1990070	cellular_component	TRAPPI protein complex
P	1990071	cellular_component	TRAPPII protein complex
P	1990072	cellular_component	TRAPPIII protein complex
Q	0000407	cellular_component	phagophore assembly site
Q	0005085	molecular_function	guanyl-nucleotide exchange factor activity
Q	0005515	molecular_function	protein binding
Q	0005783	cellular_component	endoplasmic reticulum
Q	0005794	cellular_component	Golgi apparatus
Q	0005829	cellular_component	cytosol
Q	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
Q	0006891	biological_process	intra-Golgi vesicle-mediated transport
Q	0006914	biological_process	autophagy
Q	0006995	biological_process	cellular response to nitrogen starvation
Q	0016192	biological_process	vesicle-mediated transport
Q	0016236	biological_process	macroautophagy
Q	0030008	cellular_component	TRAPP complex
Q	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
Q	0033106	cellular_component	cis-Golgi network membrane
Q	0042147	biological_process	retrograde transport, endosome to Golgi
Q	0048193	biological_process	Golgi vesicle transport
Q	1990070	cellular_component	TRAPPI protein complex
Q	1990071	cellular_component	TRAPPII protein complex
Q	1990072	cellular_component	TRAPPIII protein complex
R	0000045	biological_process	autophagosome assembly
R	0000139	cellular_component	Golgi membrane
R	0000149	molecular_function	SNARE binding
R	0000166	molecular_function	nucleotide binding
R	0000407	cellular_component	phagophore assembly site
R	0003924	molecular_function	GTPase activity
R	0005515	molecular_function	protein binding
R	0005525	molecular_function	GTP binding
R	0005737	cellular_component	cytoplasm
R	0005739	cellular_component	mitochondrion
R	0005789	cellular_component	endoplasmic reticulum membrane
R	0005795	cellular_component	Golgi stack
R	0005801	cellular_component	cis-Golgi network
R	0005829	cellular_component	cytosol
R	0006886	biological_process	intracellular protein transport
R	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
R	0006890	biological_process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
R	0006914	biological_process	autophagy
R	0012505	cellular_component	endomembrane system
R	0015031	biological_process	protein transport
R	0016192	biological_process	vesicle-mediated transport
R	0016236	biological_process	macroautophagy
R	0031410	cellular_component	cytoplasmic vesicle
R	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
R	0032456	biological_process	endocytic recycling
R	0034045	cellular_component	phagophore assembly site membrane
R	0034497	biological_process	protein localization to phagophore assembly site
R	0034498	biological_process	early endosome to Golgi transport
R	0035493	biological_process	SNARE complex assembly
R	0035494	biological_process	SNARE complex disassembly
R	0048194	biological_process	Golgi vesicle budding
R	0048211	biological_process	Golgi vesicle docking
R	0061709	biological_process	reticulophagy
R	0090114	biological_process	COPII-coated vesicle budding
R	1900101	biological_process	regulation of endoplasmic reticulum unfolded protein response
R	1990261	biological_process	pre-mRNA catabolic process
S	0000407	cellular_component	phagophore assembly site
S	0005085	molecular_function	guanyl-nucleotide exchange factor activity
S	0005515	molecular_function	protein binding
S	0005783	cellular_component	endoplasmic reticulum
S	0005794	cellular_component	Golgi apparatus
S	0005829	cellular_component	cytosol
S	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
S	0006891	biological_process	intra-Golgi vesicle-mediated transport
S	0006914	biological_process	autophagy
S	0016192	biological_process	vesicle-mediated transport
S	0016236	biological_process	macroautophagy
S	0030008	cellular_component	TRAPP complex
S	0032991	cellular_component	protein-containing complex
S	0042147	biological_process	retrograde transport, endosome to Golgi
S	0048193	biological_process	Golgi vesicle transport
S	0051276	biological_process	chromosome organization
S	1990070	cellular_component	TRAPPI protein complex
S	1990071	cellular_component	TRAPPII protein complex
S	1990072	cellular_component	TRAPPIII protein complex
T	0000407	cellular_component	phagophore assembly site
T	0005085	molecular_function	guanyl-nucleotide exchange factor activity
T	0005515	molecular_function	protein binding
T	0005783	cellular_component	endoplasmic reticulum
T	0005794	cellular_component	Golgi apparatus
T	0005829	cellular_component	cytosol
T	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
T	0006891	biological_process	intra-Golgi vesicle-mediated transport
T	0006914	biological_process	autophagy
T	0016192	biological_process	vesicle-mediated transport
T	0016236	biological_process	macroautophagy
T	0030008	cellular_component	TRAPP complex
T	0042147	biological_process	retrograde transport, endosome to Golgi
T	0048193	biological_process	Golgi vesicle transport
T	1990070	cellular_component	TRAPPI protein complex
T	1990071	cellular_component	TRAPPII protein complex
T	1990072	cellular_component	TRAPPIII protein complex
U	0000407	cellular_component	phagophore assembly site
U	0005085	molecular_function	guanyl-nucleotide exchange factor activity
U	0005515	molecular_function	protein binding
U	0005783	cellular_component	endoplasmic reticulum
U	0005794	cellular_component	Golgi apparatus
U	0005829	cellular_component	cytosol
U	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
U	0006891	biological_process	intra-Golgi vesicle-mediated transport
U	0006914	biological_process	autophagy
U	0016192	biological_process	vesicle-mediated transport
U	0016236	biological_process	macroautophagy
U	0030008	cellular_component	TRAPP complex
U	0032991	cellular_component	protein-containing complex
U	0042147	biological_process	retrograde transport, endosome to Golgi
U	0048193	biological_process	Golgi vesicle transport
U	1990070	cellular_component	TRAPPI protein complex
U	1990071	cellular_component	TRAPPII protein complex
U	1990072	cellular_component	TRAPPIII protein complex
V	0000407	cellular_component	phagophore assembly site
V	0005085	molecular_function	guanyl-nucleotide exchange factor activity
V	0005515	molecular_function	protein binding
V	0005783	cellular_component	endoplasmic reticulum
V	0005794	cellular_component	Golgi apparatus
V	0005829	cellular_component	cytosol
V	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
V	0006891	biological_process	intra-Golgi vesicle-mediated transport
V	0006914	biological_process	autophagy
V	0006995	biological_process	cellular response to nitrogen starvation
V	0016192	biological_process	vesicle-mediated transport
V	0016236	biological_process	macroautophagy
V	0030008	cellular_component	TRAPP complex
V	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
V	0033106	cellular_component	cis-Golgi network membrane
V	0042147	biological_process	retrograde transport, endosome to Golgi
V	0048193	biological_process	Golgi vesicle transport
V	1990070	cellular_component	TRAPPI protein complex
V	1990071	cellular_component	TRAPPII protein complex
V	1990072	cellular_component	TRAPPIII protein complex
W	0000407	cellular_component	phagophore assembly site
W	0005085	molecular_function	guanyl-nucleotide exchange factor activity
W	0005515	molecular_function	protein binding
W	0005783	cellular_component	endoplasmic reticulum
W	0005794	cellular_component	Golgi apparatus
W	0005829	cellular_component	cytosol
W	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
W	0006891	biological_process	intra-Golgi vesicle-mediated transport
W	0006914	biological_process	autophagy
W	0006995	biological_process	cellular response to nitrogen starvation
W	0016192	biological_process	vesicle-mediated transport
W	0016236	biological_process	macroautophagy
W	0030008	cellular_component	TRAPP complex
W	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
W	0033106	cellular_component	cis-Golgi network membrane
W	0042147	biological_process	retrograde transport, endosome to Golgi
W	0048193	biological_process	Golgi vesicle transport
W	1990070	cellular_component	TRAPPI protein complex
W	1990071	cellular_component	TRAPPII protein complex
W	1990072	cellular_component	TRAPPIII protein complex
X	0000045	biological_process	autophagosome assembly
X	0000139	cellular_component	Golgi membrane
X	0000149	molecular_function	SNARE binding
X	0000166	molecular_function	nucleotide binding
X	0000407	cellular_component	phagophore assembly site
X	0003924	molecular_function	GTPase activity
X	0005515	molecular_function	protein binding
X	0005525	molecular_function	GTP binding
X	0005737	cellular_component	cytoplasm
X	0005739	cellular_component	mitochondrion
X	0005789	cellular_component	endoplasmic reticulum membrane
X	0005795	cellular_component	Golgi stack
X	0005801	cellular_component	cis-Golgi network
X	0005829	cellular_component	cytosol
X	0006886	biological_process	intracellular protein transport
X	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
X	0006890	biological_process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
X	0006914	biological_process	autophagy
X	0012505	cellular_component	endomembrane system
X	0015031	biological_process	protein transport
X	0016192	biological_process	vesicle-mediated transport
X	0016236	biological_process	macroautophagy
X	0031410	cellular_component	cytoplasmic vesicle
X	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
X	0032456	biological_process	endocytic recycling
X	0034045	cellular_component	phagophore assembly site membrane
X	0034497	biological_process	protein localization to phagophore assembly site
X	0034498	biological_process	early endosome to Golgi transport
X	0035493	biological_process	SNARE complex assembly
X	0035494	biological_process	SNARE complex disassembly
X	0048194	biological_process	Golgi vesicle budding
X	0048211	biological_process	Golgi vesicle docking
X	0061709	biological_process	reticulophagy
X	0090114	biological_process	COPII-coated vesicle budding
X	1900101	biological_process	regulation of endoplasmic reticulum unfolded protein response
X	1990261	biological_process	pre-mRNA catabolic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PLM E 194

Chain	Residue
E	LEU67
E	ILE68
E	CYS80
E	THR86
E	LEU90
E	ALA94
E	PHE95
E	LEU144
K	LEU29

---

site_id	AC2
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PLM K 194

Chain	Residue
E	LEU29
K	LEU67
K	ILE68
K	CYS80
K	THR86
K	LEU90
K	ALA94
K	PHE95
K	LEU144

---

site_id	AC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PLM Q 194

Chain	Residue
Q	LEU67
Q	ILE68
Q	CYS80
Q	THR86
Q	LEU90
Q	ALA94
Q	PHE95
Q	LEU144
W	LEU29

---

site_id	AC4
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PLM W 194

Chain	Residue
Q	LEU29
W	LEU67
W	ILE68
W	CYS80
W	THR86
W	LEU90
W	ALA94
W	PHE95
W	LEU144

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"15692564","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	68
Details	Region: {"description":"Interaction with GDI1","evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	32
Details	Motif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	40
Details	Binding site: {"evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16395334","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1UKV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BCG","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	8
Details	Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
F	GLN67

---

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
L	GLN67

---

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
R	GLN67

---

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
X	GLN67

---

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
F	GLY18

---

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
L	GLY18

---

site_id	CSA7
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
R	GLY18

---

site_id	CSA8
Number of Residues	1
Details	Annotated By Reference To The Literature 1ksj

Chain	Residue	Details
X	GLY18

---