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3CPR

The crystal structure of Corynebacterium glutamicum dihydrodipicolinate synthase to 2.2 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0009436biological_processglyoxylate catabolic process
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0044281biological_processsmall molecule metabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0009436biological_processglyoxylate catabolic process
B0016829molecular_functionlyase activity
B0019877biological_processdiaminopimelate biosynthetic process
B0044281biological_processsmall molecule metabolic process
Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. SLVlaGTTGESptttaaE
ChainResidueDetails
ASER53-GLU70

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YDIPgrSgipIesdtmrrlselpt.IlAVKDA
ChainResidueDetails
ATYR148-ALA178

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATYR148
BTYR148

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Schiff-base intermediate with substrate => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
AKPI176
BKPI176

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATHR60
AILE216
BTHR60
BILE216

site_idSWS_FT_FI4
Number of Residues4
DetailsSITE: Part of a proton relay during catalysis => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATHR59
ATYR122
BTHR59
BTYR122

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
ATYR148
AARG153

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
BTYR148
BARG153

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
ATHR60
ATHR59

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
BTHR60
BTHR59

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PDB entries from 2024-05-01

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