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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3CF0

Structure of D2 subdomain of P97/VCP in complex with ADP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005524	molecular_function	ATP binding
A	0016887	molecular_function	ATP hydrolysis activity
B	0005524	molecular_function	ATP binding
B	0016887	molecular_function	ATP hydrolysis activity
C	0005524	molecular_function	ATP binding
C	0016887	molecular_function	ATP hydrolysis activity
D	0005524	molecular_function	ATP binding
D	0016887	molecular_function	ATP hydrolysis activity
E	0005524	molecular_function	ATP binding
E	0016887	molecular_function	ATP hydrolysis activity
F	0005524	molecular_function	ATP binding
F	0016887	molecular_function	ATP hydrolysis activity
G	0005524	molecular_function	ATP binding
G	0016887	molecular_function	ATP hydrolysis activity
H	0005524	molecular_function	ATP binding
H	0016887	molecular_function	ATP hydrolysis activity
I	0005524	molecular_function	ATP binding
I	0016887	molecular_function	ATP hydrolysis activity
J	0005524	molecular_function	ATP binding
J	0016887	molecular_function	ATP hydrolysis activity
K	0005524	molecular_function	ATP binding
K	0016887	molecular_function	ATP hydrolysis activity
L	0005524	molecular_function	ATP binding
L	0016887	molecular_function	ATP hydrolysis activity
M	0005524	molecular_function	ATP binding
M	0016887	molecular_function	ATP hydrolysis activity
N	0005524	molecular_function	ATP binding
N	0016887	molecular_function	ATP hydrolysis activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP A 900

Chain	Residue
A	ASP478
A	LEU526
A	ILE656
A	ASN660
A	GLY684
A	ALA685
A	THR688
A	ILE479
A	GLY480
A	LEU482
A	GLY521
A	CYS522
A	GLY523
A	LYS524
A	THR525

site_id	AC2
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP B 900

Chain	Residue
B	ASP478
B	ILE479
B	GLY480
B	LEU482
B	GLY521
B	CYS522
B	GLY523
B	LYS524
B	THR525
B	LEU526
B	ILE656
B	ASN660
B	GLY684
B	ALA685
B	THR688

site_id	AC3
Number of Residues	14
Details	BINDING SITE FOR RESIDUE ADP C 900

Chain	Residue
C	ASP478
C	GLY480
C	LEU482
C	GLY521
C	CYS522
C	GLY523
C	LYS524
C	THR525
C	LEU526
C	ILE656
C	ASN660
C	GLY684
C	ALA685
C	THR688

site_id	AC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP D 900

Chain	Residue
D	ASP478
D	ILE479
D	GLY480
D	LEU482
D	GLY521
D	CYS522
D	GLY523
D	LYS524
D	THR525
D	LEU526
D	ILE656
D	ASN660
D	GLY684
D	ALA685
D	THR688

site_id	AC5
Number of Residues	13
Details	BINDING SITE FOR RESIDUE ADP E 900

Chain	Residue
E	ASP478
E	GLY480
E	GLY521
E	CYS522
E	GLY523
E	LYS524
E	THR525
E	LEU526
E	ILE656
E	ASN660
E	GLY684
E	ALA685
E	THR688

site_id	AC6
Number of Residues	14
Details	BINDING SITE FOR RESIDUE ADP F 900

Chain	Residue
F	ASP478
F	ILE479
F	GLY480
F	GLY521
F	CYS522
F	GLY523
F	LYS524
F	THR525
F	LEU526
F	ILE656
F	ASN660
F	GLY684
F	ALA685
F	THR688

site_id	AC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP G 900

Chain	Residue
G	ALA685
G	THR688
G	ASP478
G	ILE479
G	GLY480
G	LEU482
G	GLY521
G	CYS522
G	GLY523
G	LYS524
G	THR525
G	LEU526
G	ILE656
G	ASN660
G	GLY684

site_id	AC8
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP H 900

Chain	Residue
H	ASP478
H	ILE479
H	GLY480
H	LEU482
H	GLY521
H	CYS522
H	GLY523
H	LYS524
H	THR525
H	LEU526
H	ILE656
H	ASN660
H	GLY684
H	ALA685
H	THR688

site_id	AC9
Number of Residues	14
Details	BINDING SITE FOR RESIDUE ADP I 900

Chain	Residue
I	ASP478
I	ILE479
I	GLY480
I	GLY521
I	CYS522
I	GLY523
I	LYS524
I	THR525
I	LEU526
I	ILE656
I	ASN660
I	GLY684
I	ALA685
I	THR688

site_id	BC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE ADP J 900

Chain	Residue
J	ASP478
J	ILE479
J	GLY480
J	PRO520
J	GLY521
J	CYS522
J	GLY523
J	LYS524
J	THR525
J	LEU526
J	ILE656
J	ASN660
J	GLY684
J	ALA685
J	THR688

site_id	BC2
Number of Residues	16
Details	BINDING SITE FOR RESIDUE ADP K 900

Chain	Residue
K	ASP478
K	ILE479
K	GLY480
K	LEU482
K	PRO520
K	GLY521
K	CYS522
K	GLY523
K	LYS524
K	THR525
K	LEU526
K	ILE656
K	ASN660
K	GLY684
K	ALA685
K	THR688

site_id	BC3
Number of Residues	16
Details	BINDING SITE FOR RESIDUE ADP L 900

Chain	Residue
L	ASP478
L	ILE479
L	GLY480
L	LEU482
L	PRO520
L	GLY521
L	CYS522
L	GLY523
L	LYS524
L	THR525
L	LEU526
L	ILE656
L	ASN660
L	GLY684
L	ALA685
L	THR688

site_id	BC4
Number of Residues	16
Details	BINDING SITE FOR RESIDUE ADP M 900

Chain	Residue
M	ASP478
M	ILE479
M	GLY480
M	LEU482
M	PRO520
M	GLY521
M	CYS522
M	GLY523
M	LYS524
M	THR525
M	LEU526
M	ILE656
M	ASN660
M	GLY684
M	ALA685
M	THR688

site_id	BC5
Number of Residues	16
Details	BINDING SITE FOR RESIDUE ADP N 900

Chain	Residue
N	ASP478
N	ILE479
N	GLY480
N	LEU482
N	PRO520
N	GLY521
N	CYS522
N	GLY523
N	LYS524
N	THR525
N	LEU526
N	ILE656
N	ASN660
N	GLY684
N	ALA685
N	THR688

Functional Information from PROSITE/UniProt

site_id	PS00674
Number of Residues	19
Details	AAA AAA-protein family signature. VfIIgATNrpdiIDpAIl.R

Chain	Residue	Details
A	VAL617-ARG635

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	14
Details	BINDING: BINDING => ECO:0000305\|PubMed:11163219, ECO:0000305\|PubMed:14988733

Chain	Residue	Details
A	GLY521
J	GLY521
K	GLY521
L	GLY521
M	GLY521
N	GLY521
B	GLY521
C	GLY521
D	GLY521
E	GLY521
F	GLY521
G	GLY521
H	GLY521
I	GLY521

site_id	SWS_FT_FI2
Number of Residues	42
Details	MOD_RES: N6-acetyllysine => ECO:0007744\|PubMed:23806337

Chain	Residue	Details
A	LYS502
D	LYS502
D	LYS505
D	LYS754
E	LYS502
E	LYS505
E	LYS754
F	LYS502
F	LYS505
F	LYS754
G	LYS502
A	LYS505
G	LYS505
G	LYS754
H	LYS502
H	LYS505
H	LYS754
I	LYS502
I	LYS505
I	LYS754
J	LYS502
J	LYS505
A	LYS754
J	LYS754
K	LYS502
K	LYS505
K	LYS754
L	LYS502
L	LYS505
L	LYS754
M	LYS502
M	LYS505
M	LYS754
B	LYS502
N	LYS502
N	LYS505
N	LYS754
B	LYS505
B	LYS754
C	LYS502
C	LYS505
C	LYS754

site_id	SWS_FT_FI3
Number of Residues	14
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0007744\|PubMed:23806337

Chain	Residue	Details
A	LYS668
J	LYS668
K	LYS668
L	LYS668
M	LYS668
N	LYS668
B	LYS668
C	LYS668
D	LYS668
E	LYS668
F	LYS668
G	LYS668
H	LYS668
I	LYS668

site_id	SWS_FT_FI4
Number of Residues	14
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:P55072

Chain	Residue	Details
A	SER702
J	SER702
K	SER702
L	SER702
M	SER702
N	SER702
B	SER702
C	SER702
D	SER702
E	SER702
F	SER702
G	SER702
H	SER702
I	SER702

237735

PDB entries from 2025-06-18

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