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3CBC

Crystal structure of Siderocalin (NGAL, Lipocalin 2) Y106F complexed with Ferric Enterobactin

Functional Information from GO Data
ChainGOidnamespacecontents
A0036094molecular_functionsmall molecule binding
B0036094molecular_functionsmall molecule binding
C0036094molecular_functionsmall molecule binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 179
ChainResidue
APRO162
AASN164
AHIS165
CLYS75

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 179
ChainResidue
CARG43
CASP45
CPRO162
CGLU163

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 180
ChainResidue
CPRO162
CASN164
CHIS165
ALYS75

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 179
ChainResidue
BLYS75
BASN164
BHIS165

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 181
ChainResidue
CTHR145
CSER146
CGLU147

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA A 180
ChainResidue
ATHR54
ATYR138

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA C 182
ChainResidue
CLYS59
CASP61
CSER63

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA C 184
ChainResidue
CTHR54
CTYR138

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 180
ChainResidue
BTHR54
BTYR138

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DBS A 301
ChainResidue
AALA40
AILE41
APHE106
APHE123
ALYS125
ALYS134

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DBS B 302
ChainResidue
BALA40
BILE41
BPHE106
BPHE123
BLYS125
BLYS134

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DBS C 303
ChainResidue
CALA40
CILE41
CPHE106
CPHE123
CLYS125
CLYS134

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 304
ChainResidue
CPRO85
CTHR93
CLEU94
CILE97
CSER105
CPHE106

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 302
ChainResidue
ATHR145
ASER146
AGLU147

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 305
ChainResidue
CGLU60
CASP61

Functional Information from PROSITE/UniProt
site_idPS00213
Number of Residues14
DetailsLIPOCALIN Lipocalin signature. NFQdnQFQGKWYVV
ChainResidueDetails
AASN21-VAL34

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PDB","id":"1X89","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1X8U","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PDB","id":"3CMP","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15642259","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1X89","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1X8U","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"10684642","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15084671","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16335952","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16740002","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19159218","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7683678","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1DFV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1QQS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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