3C5Y
Crystal structure of a putative ribose 5-phosphate isomerase (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
C | 0005975 | biological_process | carbohydrate metabolic process |
C | 0016853 | molecular_function | isomerase activity |
C | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
D | 0005975 | biological_process | carbohydrate metabolic process |
D | 0016853 | molecular_function | isomerase activity |
D | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
E | 0005975 | biological_process | carbohydrate metabolic process |
E | 0016853 | molecular_function | isomerase activity |
E | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
F | 0005975 | biological_process | carbohydrate metabolic process |
F | 0016853 | molecular_function | isomerase activity |
F | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
G | 0005975 | biological_process | carbohydrate metabolic process |
G | 0016853 | molecular_function | isomerase activity |
G | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
H | 0005975 | biological_process | carbohydrate metabolic process |
H | 0016853 | molecular_function | isomerase activity |
H | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
I | 0005975 | biological_process | carbohydrate metabolic process |
I | 0016853 | molecular_function | isomerase activity |
I | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
J | 0005975 | biological_process | carbohydrate metabolic process |
J | 0016853 | molecular_function | isomerase activity |
J | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
K | 0005975 | biological_process | carbohydrate metabolic process |
K | 0016853 | molecular_function | isomerase activity |
K | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
L | 0005975 | biological_process | carbohydrate metabolic process |
L | 0016853 | molecular_function | isomerase activity |
L | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
M | 0005975 | biological_process | carbohydrate metabolic process |
M | 0016853 | molecular_function | isomerase activity |
M | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
N | 0005975 | biological_process | carbohydrate metabolic process |
N | 0016853 | molecular_function | isomerase activity |
N | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
O | 0005975 | biological_process | carbohydrate metabolic process |
O | 0016853 | molecular_function | isomerase activity |
O | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
P | 0005975 | biological_process | carbohydrate metabolic process |
P | 0016853 | molecular_function | isomerase activity |
P | 0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NO3 F 213 |
Chain | Residue |
F | TYR195 |
F | ARG208 |
F | NO3214 |
F | NO3215 |
F | HOH434 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NO3 F 214 |
Chain | Residue |
F | PRO196 |
F | NO3213 |
F | HOH389 |
F | HOH434 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 F 215 |
Chain | Residue |
F | ALA191 |
F | TYR195 |
F | ARG208 |
F | NO3213 |
F | HOH422 |
F | HOH427 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NO3 F 216 |
Chain | Residue |
F | GLN-1 |
F | GLY0 |
F | MSE1 |
F | GLY30 |
F | LYS32 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NO3 G 213 |
Chain | Residue |
G | TYR195 |
G | ARG208 |
G | NO3214 |
G | HOH329 |
G | HOH434 |
J | TYR195 |
J | PRO196 |
J | ARG208 |
site_id | AC6 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE NO3 G 214 |
Chain | Residue |
G | ALA191 |
G | TYR195 |
G | ARG208 |
G | NO3213 |
G | HOH426 |
G | HOH427 |
J | ALA191 |
J | TYR195 |
J | ARG208 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NO3 I 213 |
Chain | Residue |
I | GLY0 |
I | GLY30 |
I | LYS32 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 P 213 |
Chain | Residue |
O | TYR49 |
P | ARG147 |
P | ILE150 |
P | MSE151 |
P | ASN154 |
P | HOH221 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 213 |
Chain | Residue |
A | PHE89 |
A | ASN106 |
A | ARG155 |
A | LEU158 |
A | ARG159 |
A | HOH245 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 214 |
Chain | Residue |
A | ASP163 |
A | CYS166 |
A | HOH252 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 215 |
Chain | Residue |
A | LYS174 |
A | THR175 |
A | VAL176 |
A | GLN178 |
A | HOH356 |
A | HOH383 |
H | LYS174 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 216 |
Chain | Residue |
A | ASP168 |
A | LEU170 |
A | THR171 |
A | LYS174 |
A | HOH315 |
A | HOH400 |
H | THR175 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 217 |
Chain | Residue |
A | ARG147 |
A | ILE150 |
A | MSE151 |
A | ASN154 |
B | TYR49 |
B | HOH250 |
B | HOH278 |
site_id | BC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 218 |
Chain | Residue |
A | ASN61 |
A | SER62 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 219 |
Chain | Residue |
A | LYS32 |
A | VAL33 |
A | LEU193 |
A | HOH249 |
A | HOH260 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 220 |
Chain | Residue |
A | ASP95 |
A | ASN126 |
A | HOH298 |
C | ASP95 |
D | LYS117 |
site_id | BC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 213 |
Chain | Residue |
A | HOH281 |
B | PHE89 |
B | ASN106 |
B | ARG155 |
B | LEU158 |
B | ARG159 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B 214 |
Chain | Residue |
B | PHE100 |
B | LYS133 |
B | HOH281 |
D | ASP129 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 215 |
Chain | Residue |
B | HOH327 |
B | HOH355 |
B | HOH398 |
B | HOH419 |
D | ILE94 |
B | ASP95 |
site_id | CC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 216 |
Chain | Residue |
B | ARG167 |
B | THR171 |
B | EDO217 |
B | HOH280 |
G | ARG167 |
G | THR171 |
G | HOH292 |
site_id | CC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO B 217 |
Chain | Residue |
A | ARG167 |
B | ARG167 |
B | EDO216 |
B | HOH297 |
B | HOH401 |
B | HOH421 |
G | ARG167 |
H | ARG167 |
H | HOH369 |
site_id | CC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 218 |
Chain | Residue |
B | ASP177 |
B | GLN178 |
B | HOH261 |
B | HOH379 |
G | HOH235 |
J | EDO215 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 213 |
Chain | Residue |
C | PHE89 |
C | ASN106 |
C | ARG155 |
C | ARG159 |
C | HOH301 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO C 214 |
Chain | Residue |
C | ILE94 |
C | HOH253 |
C | HOH259 |
C | HOH270 |
site_id | CC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO D 213 |
Chain | Residue |
C | HOH316 |
D | ASN106 |
D | ARG155 |
D | ARG159 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO D 214 |
Chain | Residue |
C | ARG167 |
D | ARG167 |
D | ASP168 |
D | THR171 |
E | HOH336 |
F | ARG167 |
site_id | CC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO E 213 |
Chain | Residue |
E | PHE89 |
E | ASN106 |
E | ARG155 |
E | ARG159 |
E | HOH249 |
E | HOH420 |
E | HOH442 |
site_id | DC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO E 214 |
Chain | Residue |
E | PRO86 |
E | LYS162 |
E | ASP163 |
E | CYS166 |
E | HOH260 |
E | HOH356 |
site_id | DC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO E 215 |
Chain | Residue |
E | ARG147 |
E | ILE150 |
E | MSE151 |
E | ASN154 |
E | HOH230 |
E | HOH268 |
F | TYR49 |
F | EDO219 |
F | HOH232 |
site_id | DC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO E 216 |
Chain | Residue |
E | LYS14 |
E | SER116 |
E | PHE119 |
site_id | DC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO E 217 |
Chain | Residue |
E | PRO144 |
E | ARG145 |
E | GLU146 |
site_id | DC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO F 217 |
Chain | Residue |
F | PHE100 |
F | LYS133 |
H | LEU125 |
H | HOH251 |
site_id | DC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO F 218 |
Chain | Residue |
F | PHE89 |
F | ASN106 |
F | ARG155 |
F | LEU158 |
F | ARG159 |
F | HOH241 |
site_id | DC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO F 219 |
Chain | Residue |
E | ILE105 |
E | MSE151 |
E | EDO215 |
F | SER10 |
F | CSD72 |
F | GLY73 |
F | HOH257 |
G | TRP121 |
site_id | DC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO F 220 |
Chain | Residue |
F | SER10 |
F | GLN11 |
F | ALA12 |
F | ALA13 |
F | LYS14 |
site_id | DC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO F 221 |
Chain | Residue |
F | PHE34 |
F | GLU192 |
F | ASN197 |
F | HOH234 |
F | HOH307 |
F | HOH428 |
site_id | EC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO F 222 |
Chain | Residue |
F | MSE51 |
F | LEU180 |
F | HOH416 |
site_id | EC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO G 215 |
Chain | Residue |
G | PHE89 |
G | ASN106 |
G | ARG155 |
G | ARG159 |
G | HOH229 |
site_id | EC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO G 216 |
Chain | Residue |
E | HOH322 |
G | PHE100 |
G | LYS133 |
G | HOH402 |
site_id | EC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO G 217 |
Chain | Residue |
F | TRP121 |
G | SER10 |
G | CSD72 |
G | GLY73 |
G | HOH413 |
H | MSE151 |
site_id | EC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO G 218 |
Chain | Residue |
E | ILE94 |
E | ASN126 |
E | HOH279 |
G | ASP95 |
G | HOH282 |
G | HOH441 |
site_id | EC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO G 219 |
Chain | Residue |
G | GLU192 |
G | ASN197 |
site_id | EC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO G 220 |
Chain | Residue |
E | LEU125 |
E | HOH292 |
G | HOH383 |
site_id | EC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO G 221 |
Chain | Residue |
B | LYS174 |
G | THR175 |
G | VAL176 |
G | ASP177 |
G | HOH288 |
site_id | EC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO H 213 |
Chain | Residue |
H | PHE89 |
H | ASN106 |
H | ARG155 |
H | LEU158 |
H | ARG159 |
H | HOH276 |
H | HOH363 |
site_id | FC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO H 214 |
Chain | Residue |
H | PRO86 |
H | ASP163 |
H | CYS166 |
H | HOH295 |
site_id | FC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H 215 |
Chain | Residue |
F | ILE94 |
F | ASN126 |
H | ASP95 |
H | HOH315 |
H | HOH343 |
H | HOH347 |
site_id | FC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H 216 |
Chain | Residue |
E | TRP121 |
G | ARG147 |
H | GLU8 |
H | SER10 |
H | CSD72 |
H | GLY73 |
site_id | FC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H 217 |
Chain | Residue |
H | ASP177 |
H | GLN178 |
H | ASP179 |
H | HOH301 |
H | HOH323 |
H | HOH366 |
site_id | FC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H 218 |
Chain | Residue |
F | TYR143 |
H | PHE119 |
H | GLY120 |
H | TRP121 |
H | ALA122 |
H | GLU124 |
site_id | FC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO I 214 |
Chain | Residue |
I | PHE89 |
I | ASN106 |
I | ARG155 |
I | LEU158 |
I | ARG159 |
I | HOH251 |
site_id | FC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO I 215 |
Chain | Residue |
I | PHE100 |
I | LYS133 |
I | HOH225 |
I | HOH256 |
L | ASP129 |
site_id | FC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO I 216 |
Chain | Residue |
I | LYS117 |
I | GLY118 |
I | HOH323 |
I | HOH398 |
K | GLY118 |
K | HOH364 |
site_id | FC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO I 217 |
Chain | Residue |
I | LYS2 |
I | PRO196 |
I | ASN197 |
I | HOH258 |
I | HOH315 |
site_id | GC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO J 213 |
Chain | Residue |
I | HOH292 |
J | PHE89 |
J | ASN106 |
J | ARG155 |
J | ARG159 |
site_id | GC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO J 214 |
Chain | Residue |
J | ASP168 |
J | LEU170 |
J | THR171 |
J | LYS174 |
O | ARG167 |
site_id | GC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO J 215 |
Chain | Residue |
B | EDO218 |
G | ASN205 |
G | TYR206 |
G | HOH232 |
J | LYS189 |
J | GLU192 |
site_id | GC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO K 213 |
Chain | Residue |
K | PHE89 |
K | ASN106 |
K | ARG155 |
K | ARG159 |
K | HOH236 |
site_id | GC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO K 214 |
Chain | Residue |
J | HOH329 |
K | PHE100 |
K | LYS133 |
K | HOH315 |
site_id | GC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO K 215 |
Chain | Residue |
J | ASN126 |
K | ASP95 |
K | HOH334 |
K | HOH349 |
site_id | GC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO L 213 |
Chain | Residue |
L | PHE89 |
L | ASN106 |
L | ARG155 |
L | ARG159 |
L | HOH220 |
site_id | GC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO M 213 |
Chain | Residue |
M | PHE89 |
M | ASN106 |
M | ARG155 |
M | LEU158 |
M | ARG159 |
M | HOH228 |
site_id | GC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO M 214 |
Chain | Residue |
M | LYS32 |
M | VAL33 |
M | PHE34 |
M | EDO215 |
M | HOH268 |
site_id | HC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO M 215 |
Chain | Residue |
M | LYS32 |
M | PHE34 |
M | GLU192 |
M | ASN197 |
M | EDO214 |
site_id | HC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO M 216 |
Chain | Residue |
L | THR175 |
M | ASP168 |
M | LEU170 |
M | THR171 |
M | LYS174 |
site_id | HC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO N 213 |
Chain | Residue |
N | PHE89 |
N | ASN106 |
N | ARG155 |
N | ARG159 |
N | HOH227 |
site_id | HC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO N 214 |
Chain | Residue |
N | PHE100 |
N | LYS133 |
N | HOH248 |
N | HOH254 |
O | LEU125 |
O | ASP129 |
site_id | HC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO N 215 |
Chain | Residue |
M | LYS117 |
N | ASP95 |
N | HOH297 |
O | ILE94 |
O | ASN126 |
site_id | HC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO P 214 |
Chain | Residue |
P | PHE89 |
P | ASN106 |
P | ARG155 |
P | LEU158 |
P | ARG159 |
P | HOH224 |