3C5Y
Crystal structure of a putative ribose 5-phosphate isomerase (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-12-09 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91837 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 106.754, 109.462, 167.569 |
Unit cell angles | 90.00, 102.92, 90.00 |
Refinement procedure
Resolution | 49.147 - 1.810 |
R-factor | 0.173 |
Rwork | 0.170 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ppw |
RMSD bond length | 0.018 |
RMSD bond angle | 1.709 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.4.0067) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.147 | 49.147 | 1.870 |
High resolution limit [Å] | 1.810 | 3.890 | 1.810 |
Rmerge | 0.063 | 0.038 | 0.429 |
Number of reflections | 330786 | 32297 | 30758 |
<I/σ(I)> | 8.69 | 18.8 | 2.3 |
Completeness [%] | 96.9 | 92.6 | 97.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.1 | 277 | NANODROP, 0.2M LiNO3, 20.0% PEG 3350, No Buffer pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K |