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3C5E

Crystal structure of human acyl-CoA synthetase medium-chain family member 2A (L64P mutation) in complex with ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004321molecular_functionfatty-acyl-CoA synthase activity
A0005524molecular_functionATP binding
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0006629biological_processlipid metabolic process
A0006631biological_processfatty acid metabolic process
A0006633biological_processfatty acid biosynthetic process
A0006637biological_processacyl-CoA metabolic process
A0015645molecular_functionfatty acid ligase activity
A0016405molecular_functionCoA-ligase activity
A0016874molecular_functionligase activity
A0016878molecular_functionacid-thiol ligase activity
A0018858molecular_functionbenzoate-CoA ligase activity
A0031956molecular_functionmedium-chain fatty acid-CoA ligase activity
A0036112biological_processmedium-chain fatty-acyl-CoA metabolic process
A0042593biological_processglucose homeostasis
A0046872molecular_functionmetal ion binding
A0070328biological_processtriglyceride homeostasis
A0102391molecular_functiondecanoate-CoA ligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 701
ChainResidue
AMET483
AHIS485
AVAL488
AHOH1179
AHOH1365

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 702
ChainResidue
AHOH915
AHOH916
AATP801
AHOH911
AHOH912
AHOH913

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 703
ChainResidue
ALEU288
APRO289
ALYS290
APHE291
AHOH1002

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 704
ChainResidue
AARG316
ALEU342
ATHR345

site_idAC5
Number of Residues32
DetailsBINDING SITE FOR RESIDUE ATP A 801
ChainResidue
ATHR221
ASER222
AGLY223
ATHR224
ASER225
ALYS229
AGLY338
AGLU339
ASER340
AGLU359
ASER360
ATYR361
AGLY362
AGLN363
ATHR364
AASP446
APHE458
AARG461
ALYS557
AMG702
AHOH910
AHOH911
AHOH912
AHOH913
AHOH914
AHOH915
AHOH916
AHOH946
AHOH1067
AHOH1413
AHOH1457
AHOH1461

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE TRS A 802
ChainResidue
ALEU79
AMET80
ATRP81
AGLU85
AASN89
AHOH998

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 803
ChainResidue
ATRP71
AVAL116
APRO117
AGLU118
ALYS195
AHOH1104
AHOH1108

Functional Information from PROSITE/UniProt
site_idPS00455
Number of Residues12
DetailsAMP_BINDING Putative AMP-binding domain signature. IYFTSGTSGlPK
ChainResidueDetails
AILE218-LYS229

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000269|PubMed:19345228
ChainResidueDetails
AGLN139
ATHR364
ASER469
AARG472
AARG501
ALYS532
ATYR540

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:19345228, ECO:0000269|Ref.7
ChainResidueDetails
ATHR221
AGLU359
AASP446
AARG461
ALYS557

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q68CK6
ChainResidueDetails
ASER513

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PDB entries from 2025-06-11

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