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3BK1

Crystal Structure Analysis of RNase J

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0004527molecular_functionexonuclease activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0006396biological_processRNA processing
A0008270molecular_functionzinc ion binding
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 945
ChainResidue
ASER340
AHIS372
ASER374
AGLY375
AHIS376
AHOH952
AHOH994

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 946
ChainResidue
AMSE313
APRO341
AILE342
AASN345
AVAL349
AHOH1113
AGLN311
APRO312

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 947
ChainResidue
AARG147
AHIS186
AARG416
AHOH1027
AHOH1102
AHOH1122

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 948
ChainResidue
AHIS75
AHIS77
AHIS150
AASP172
AZN949
AHOH953

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 949
ChainResidue
AASP79
AHIS80
AASP172
AHIS398
AZN948
AHOH953

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 601
ChainResidue
AGLN379
AASN406

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 602
ChainResidue
ATHR178
AMSE218
ALYS222

Functional Information from PROSITE/UniProt
site_idPS00216
Number of Residues18
DetailsSUGAR_TRANSPORT_1 Sugar transport proteins signature 1. VIWAAEKYGRKvamegrS
ChainResidueDetails
AVAL250-SER267

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01491, ECO:0000269|PubMed:21893286
ChainResidueDetails
AHIS75
AHIS77
AASP79
AHIS80
AHIS150
AASP172
AHIS398

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AALA241
AHIS372

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate binding
ChainResidueDetails
AALA42

221716

PDB entries from 2024-06-26

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