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3BBR

Crystal structure of the iGluR2 ligand binding core (S1S2J-N775S) in complex with a dimeric positive modulator as well as glutamate at 2.25 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0015276molecular_functionligand-gated monoatomic ion channel activity
A0016020cellular_componentmembrane
B0015276molecular_functionligand-gated monoatomic ion channel activity
B0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 264
ChainResidue
BARG148
BTRP159
BARG163

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 265
ChainResidue
BHOH399
BHOH442
BASP139
BSER140
BLYS144
BARG148
BHOH297
BHOH379

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 264
ChainResidue
ASER140
ALYS144
AARG148
AHOH295
AHOH312
AHOH366

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 266
ChainResidue
BHIS23
BARG31
BHOH285
BHOH523
BHOH534

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 265
ChainResidue
AARG31
AHOH294
AHOH318
AHOH328
AHOH461
BLYS183

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 266
ChainResidue
AASN22

site_idAC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE GLU A 267
ChainResidue
ATYR61
APRO89
ALEU90
ATHR91
AARG96
ALEU138
AGLY141
ASER142
ATHR143
AGLU193
ATYR220
AHOH281
AHOH282
AHOH304

site_idAC8
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GLU B 267
ChainResidue
BTYR61
BPRO89
BLEU90
BTHR91
BARG96
BGLY141
BSER142
BTHR143
BGLU193
BTYR220
BHOH276
BHOH287
BHOH298

site_idAC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE BHY A 268
ChainResidue
ALYS104
APRO105
AMET107
ASER108
ASER217
ALYS218
AGLY219
ALEU239
AHOH416
AHOH437
BLYS104
BPRO105
BMET107
BSER108
BSER217
BLYS218
BGLY219
BLEU239
BSER242

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 268
ChainResidue
BTYR161
BSER164
BALA165
BGLU166
BHOH425
BHOH457

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 269
ChainResidue
AARG148
ATRP159
AARG163

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues80
DetailsTRANSMEM: Helical
ChainResidueDetails
AALA134-VAL154
AASP207-GLY227
BALA134-VAL154
BASP207-GLY227

site_idSWS_FT_FI2
Number of Residues62
DetailsTOPO_DOM: Cytoplasmic
ChainResidueDetails
APHE155-VAL181
AGLU201-CYS206
BPHE155-VAL181
BGLU201-CYS206

site_idSWS_FT_FI3
Number of Residues30
DetailsINTRAMEM: Helical; Pore-forming
ChainResidueDetails
AARG182-ASN197
BARG182-ASN197

site_idSWS_FT_FI4
Number of Residues4
DetailsINTRAMEM:
ChainResidueDetails
AGLU198-ILE200
BGLU198-ILE200

site_idSWS_FT_FI5
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:11086992, ECO:0000269|PubMed:16483599, ECO:0007744|PDB:1FTJ, ECO:0007744|PDB:2CMO
ChainResidueDetails
APRO89
BSER142
BTHR143
BGLU193
ATHR91
AARG96
ASER142
ATHR143
AGLU193
BPRO89
BTHR91
BARG96

site_idSWS_FT_FI6
Number of Residues6
DetailsSITE: Interaction with the cone snail toxin Con-ikot-ikot => ECO:0000269|PubMed:25103405
ChainResidueDetails
AARG64
AARG148
ALYS240
BARG64
BARG148
BLYS240

site_idSWS_FT_FI7
Number of Residues2
DetailsSITE: Crucial to convey clamshell closure to channel opening => ECO:0000269|PubMed:25103405
ChainResidueDetails
AILE121
BILE121

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKC => ECO:0000269|PubMed:8848293
ChainResidueDetails
ASER150
BSER150

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKG => ECO:0000269|PubMed:8848293
ChainResidueDetails
ASER184
BSER184

site_idSWS_FT_FI10
Number of Residues2
DetailsLIPID: S-palmitoyl cysteine => ECO:0000250
ChainResidueDetails
AILE200
BILE200

site_idSWS_FT_FI11
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN3
BASN3

221716

PDB entries from 2024-06-26

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