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3B8X

Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000271biological_processpolysaccharide biosynthetic process
A0003824molecular_functioncatalytic activity
A0008483molecular_functiontransaminase activity
A0030170molecular_functionpyridoxal phosphate binding
A0046872molecular_functionmetal ion binding
B0000271biological_processpolysaccharide biosynthetic process
B0003824molecular_functioncatalytic activity
B0008483molecular_functiontransaminase activity
B0030170molecular_functionpyridoxal phosphate binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 669
ChainResidue
ATHR175
AASP201
AHOH688
AHOH751
BHOH717
BHOH747

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 671
ChainResidue
AHOH744
AHOH872
ALEU6
AASN371
AHOH743

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 672
ChainResidue
AGLU80
ALYS103
AALA122
ATHR124
ASER126
ATHR127

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 673
ChainResidue
ATHR10
AASN188
AARG273
AGLN373
AHOH831
AHOH853

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 666
ChainResidue
BLEU6
BASN371
BHOH694
BHOH722
BHOH745
BHOH751

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA B 667
ChainResidue
BGLU375
BASP378
BHOH847
BHOH912
BHOH995
BHOH997
BHOH1000

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 668
ChainResidue
APHE242
BASN341
BASP343
BHOH895
BHOH959

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 670
ChainResidue
BTHR175
BASP201
BHOH765
BHOH798
BHOH859
BHOH892

site_idAC9
Number of Residues30
DetailsBINDING SITE FOR RESIDUE G4M A 500
ChainResidue
ASER55
AGLY56
ASER57
AASN60
ASER87
ATRP88
ATHR91
AASP159
ACYS161
AGLU162
ASER183
APHE185
ATYR186
ASER187
AGLU329
AARG331
AHOH677
AHOH756
AHOH817
AHOH885
AHOH914
BLYS26
BMET27
BPHE28
BTHR29
BHIS215
BARG219
BPHE240
BASN248
BHOH903

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 674
ChainResidue
AGLU38
AALA50
ATYR206
AHOH811

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 675
ChainResidue
ASER9
ATHR10
ATRP11
AARG268
AGLN373

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 676
ChainResidue
AGLY78
AGLU80
AARG101

site_idBC4
Number of Residues30
DetailsBINDING SITE FOR RESIDUE G4M B 500
ChainResidue
BGLY56
BSER57
BTRP88
BTHR90
BASP159
BCYS161
BGLU162
BSER183
BPHE185
BTYR186
BSER187
BGLU329
BARG331
BHOH676
BHOH705
BHOH742
BHOH761
BHOH864
BHOH866
BHOH925
ALYS26
AMET27
APHE28
ATHR29
AHIS215
AARG219
APHE240
AASN248
BLEU6
BSER55

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cl1
ChainResidueDetails
ATRP88
AASP159

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cl1
ChainResidueDetails
BTRP88
BASP159

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PDB entries from 2024-07-10

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