3B0V
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
C | 0000049 | molecular_function | tRNA binding |
C | 0000166 | molecular_function | nucleotide binding |
C | 0002943 | biological_process | tRNA dihydrouridine synthesis |
C | 0008033 | biological_process | tRNA processing |
C | 0010181 | molecular_function | FMN binding |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0017150 | molecular_function | tRNA dihydrouridine synthase activity |
C | 0050660 | molecular_function | flavin adenine dinucleotide binding |
C | 0102264 | molecular_function | tRNA-dihydrouridine20 synthase activity |
C | 0102266 | molecular_function | tRNA-dihydrouridine20a synthase activity |
D | 0000049 | molecular_function | tRNA binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0002943 | biological_process | tRNA dihydrouridine synthesis |
D | 0008033 | biological_process | tRNA processing |
D | 0010181 | molecular_function | FMN binding |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0017150 | molecular_function | tRNA dihydrouridine synthase activity |
D | 0050660 | molecular_function | flavin adenine dinucleotide binding |
D | 0102264 | molecular_function | tRNA-dihydrouridine20 synthase activity |
D | 0102266 | molecular_function | tRNA-dihydrouridine20a synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE FMN C 400 |
Chain | Residue |
A | H2U20 |
C | HIS164 |
C | ARG178 |
C | ASN203 |
C | GLY205 |
C | GLY225 |
C | ARG226 |
C | ALA9 |
C | PRO10 |
C | MSE11 |
C | VAL12 |
C | MSE36 |
C | GLN63 |
C | ASN90 |
C | LYS132 |
site_id | AC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE FMN D 400 |
Chain | Residue |
B | H2U20 |
D | ALA9 |
D | PRO10 |
D | MSE11 |
D | VAL12 |
D | MSE36 |
D | GLN63 |
D | ASN90 |
D | LYS132 |
D | HIS164 |
D | ARG178 |
D | ASN203 |
D | GLY204 |
D | GLY205 |
D | GLY225 |
D | ARG226 |
Functional Information from PROSITE/UniProt
site_id | PS01136 |
Number of Residues | 19 |
Details | UPF0034 Uncharacterized protein family UPF0034 signature. INLNlGCPsek.Aqeggy.GA |
Chain | Residue | Details |
C | ILE87-ALA105 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton donor => ECO:0000305|PubMed:22123979 |
Chain | Residue | Details |
C | CYS93 | |
D | CYS93 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:22123979, ECO:0007744|PDB:3B0P, ECO:0007744|PDB:3B0U, ECO:0007744|PDB:3B0V |
Chain | Residue | Details |
C | PRO10 | |
D | HIS164 | |
D | ASN203 | |
D | GLY225 | |
C | GLN63 | |
C | LYS132 | |
C | HIS164 | |
C | ASN203 | |
C | GLY225 | |
D | PRO10 | |
D | GLN63 | |
D | LYS132 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | SITE: Interacts with tRNA => ECO:0000269|PubMed:22123979 |
Chain | Residue | Details |
C | ASN90 | |
C | ARG178 | |
D | ASN90 | |
D | ARG178 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | SITE: Interacts with tRNA; defines subfamily-specific binding signature => ECO:0000269|PubMed:22123979, ECO:0000305|PubMed:25902496 |
Chain | Residue | Details |
C | LYS97 | |
C | LYS175 | |
C | ARG290 | |
C | ARG293 | |
D | LYS97 | |
D | LYS175 | |
D | ARG290 | |
D | ARG293 |