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3AY0

Crystal structure of Methanocaldococcus jannaschii Trm5 in complex with adenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008175molecular_functiontRNA methyltransferase activity
A0030488biological_processtRNA methylation
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0002939biological_processtRNA N1-guanine methylation
B0005737cellular_componentcytoplasm
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008175molecular_functiontRNA methyltransferase activity
B0030488biological_processtRNA methylation
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 337
ChainResidue
AGLU111
AHOH347
BHIS271
BLYS272

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 338
ChainResidue
ALYS175
AHIS227
AGLU230
AHOH346

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 339
ChainResidue
AHOH341
AHOH343
AHIS11

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ADN A 401
ChainResidue
ATYR177
APHE203
AASP223
AILE224
AASN225
ASER250
AASP251
AVAL252
AASN265
APHE273

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN B 337
ChainResidue
BHIS227
BGLU230

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN B 338
ChainResidue
BHIS243
BHOH340

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ADN B 402
ChainResidue
BTYR177
BPHE203
BASP223
BILE224
BASN225
BSER250
BASP251
BVAL252
BASN265
BLEU266
BPHE273

Functional Information from PROSITE/UniProt
site_idPS00539
Number of Residues6
DetailsPYROKININ Pyrokinins signature. FSPRLG
ChainResidueDetails
APHE178-GLY183

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01021, ECO:0000269|PubMed:19749755
ChainResidueDetails
AARG186
AASP223
AASP251
AASN265
BARG186
BASP223
BASP251
BASN265

223532

PDB entries from 2024-08-07

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