3AXK

Structure of rice Rubisco in complex with NADP(H)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0009507	cellular_component	chloroplast
A	0009536	cellular_component	plastid
A	0009853	biological_process	photorespiration
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016491	molecular_function	oxidoreductase activity
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0046872	molecular_function	metal ion binding
B	0000166	molecular_function	nucleotide binding
B	0000287	molecular_function	magnesium ion binding
B	0004497	molecular_function	monooxygenase activity
B	0009507	cellular_component	chloroplast
B	0009536	cellular_component	plastid
B	0009853	biological_process	photorespiration
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016491	molecular_function	oxidoreductase activity
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL A 501

Chain	Residue
A	LEU270
A	GLY273
A	MET297
A	ILE301
A	HOH627
A	HOH628
A	HOH629
B	LEU270
B	ILE301

---

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 502

Chain	Residue
A	HIS86
A	GLU88
A	LYS356
A	ARG358
B	HOH976

---

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 478

Chain	Residue
A	KCX201
A	ASP203
A	GLU204
A	HOH616
A	HOH693
A	HOH901

---

site_id	AC4
Number of Residues	28
Details	BINDING SITE FOR RESIDUE NDP A 479

Chain	Residue
A	LYS175
A	HIS294
A	ARG295
A	HIS298
A	SER379
A	GLY380
A	GLY381
A	GLY403
A	GLY404
A	GLY405
A	HOH580
A	HOH595
A	HOH614
A	HOH616
A	HOH693
A	HOH758
A	HOH1073
A	HOH1080
A	HOH1081
A	HOH1083
A	HOH1085
A	HOH1086
A	HOH1115
B	GLU60
B	ASN123
B	GLY126
B	PHE127
B	HOH733

---

site_id	AC5
Number of Residues	32
Details	BINDING SITE FOR RESIDUE NDP A 480

Chain	Residue
A	GLU60
A	THR68
A	ASN123
A	GLY126
A	PHE127
A	HOH534
A	HOH594
A	HOH854
A	HOH1074
A	HOH1076
A	HOH1090
A	HOH1091
A	HOH1092
A	HOH1093
A	HOH1096
B	LYS175
B	HIS294
B	ARG295
B	HIS298
B	SER379
B	GLY380
B	GLY381
B	ILE382
B	GLY404
B	GLY405
B	HOH696
B	HOH787
B	HOH855
B	HOH1078
B	HOH1079
B	HOH1087
B	HOH1125

---

site_id	AC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL B 503

Chain	Residue
A	SER145
A	LYS146
A	PHE148
A	ARG213
A	HOH497
A	HOH539
A	HOH1109
B	GLU110
B	GOL504

---

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL B 504

Chain	Residue
A	LYS146
A	THR147
A	HOH894
A	HOH895
B	GOL503
B	HOH654

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG B 478

Chain	Residue
B	HOH787
B	HOH855
B	KCX201
B	ASP203
B	GLU204
B	HOH734

---

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE

Chain	Residue	Details
A	GLY196-GLU204

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	LYS175
A	HIS294
B	LYS175
B	HIS294

---

site_id	SWS_FT_FI2
Number of Residues	12
Details	BINDING: BINDING => ECO:0000269|PubMed:22609438, ECO:0007744|PDB:3AXK

Chain	Residue	Details
A	GLU60
B	LYS175
B	ARG295
B	GLY381
A	THR68
A	PHE127
A	LYS175
A	ARG295
A	GLY381
B	GLU60
B	THR68
B	PHE127

---

site_id	SWS_FT_FI3
Number of Residues	8
Details	BINDING: BINDING => ECO:0000269|PubMed:22609438, ECO:0007744|PDB:1WDD

Chain	Residue	Details
A	THR65
A	THR173
A	HIS327
A	SER379
B	THR65
B	THR173
B	HIS327
B	SER379

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	BINDING: in homodimeric partner => ECO:0000269|PubMed:22609438, ECO:0007744|PDB:1WDD, ECO:0007744|PDB:3AXM

Chain	Residue	Details
A	ASN123
B	ASN123

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	BINDING: via carbamate group => ECO:0000269|PubMed:22609438, ECO:0007744|PDB:1WDD, ECO:0007744|PDB:3AXK, ECO:0007744|PDB:3AXM

Chain	Residue	Details
A	KCX201
B	KCX201

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	BINDING: BINDING => ECO:0000269|PubMed:22609438, ECO:0007744|PDB:1WDD, ECO:0007744|PDB:3AXK, ECO:0007744|PDB:3AXM

Chain	Residue	Details
A	ASP203
A	GLU204
B	ASP203
B	GLU204

---

site_id	SWS_FT_FI7
Number of Residues	4
Details	BINDING: BINDING => ECO:0007744|PDB:1WDD

Chain	Residue	Details
A	HIS294
A	LYS334
B	HIS294
B	LYS334

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	BINDING: BINDING => ECO:0000269|PubMed:22609438

Chain	Residue	Details
A	GLY404
B	GLY404

---

site_id	SWS_FT_FI9
Number of Residues	2
Details	SITE: Transition state stabilizer

Chain	Residue	Details
A	LYS334
B	LYS334

---

site_id	SWS_FT_FI10
Number of Residues	2
Details	MOD_RES: N-acetylproline => ECO:0000250

Chain	Residue	Details
A	PRO3
B	PRO3

---

site_id	SWS_FT_FI11
Number of Residues	2
Details	MOD_RES: N6-carboxylysine => ECO:0000269|PubMed:22609438

Chain	Residue	Details
A	KCX201
B	KCX201

---