3AJV
Splicing endonuclease from Aeropyrum pernix
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000213 | molecular_function | tRNA-intron endonuclease activity |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
A | 0016020 | cellular_component | membrane |
B | 0000213 | molecular_function | tRNA-intron endonuclease activity |
B | 0000379 | biological_process | tRNA-type intron splice site recognition and cleavage |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
B | 0008033 | biological_process | tRNA processing |
B | 0016829 | molecular_function | lyase activity |
C | 0000213 | molecular_function | tRNA-intron endonuclease activity |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
C | 0016020 | cellular_component | membrane |
D | 0000213 | molecular_function | tRNA-intron endonuclease activity |
D | 0000379 | biological_process | tRNA-type intron splice site recognition and cleavage |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
D | 0008033 | biological_process | tRNA processing |
D | 0016829 | molecular_function | lyase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 171 |
Chain | Residue |
A | SER82 |
A | LEU83 |
A | ASP84 |
A | SER123 |
A | TYR126 |
A | HOH548 |
D | ASP17 |
D | HOH255 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 172 |
Chain | Residue |
A | LYS95 |
A | ILE158 |
A | TYR160 |
A | HOH187 |
B | HOH484 |
A | ASP91 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 187 |
Chain | Residue |
B | ARG126 |
B | ALA134 |
B | PRO135 |
B | PHE136 |
B | ARG163 |
B | HOH212 |
B | HOH383 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL B 188 |
Chain | Residue |
B | ARG154 |
B | HOH231 |
B | HOH413 |
B | HOH481 |
B | HOH544 |
D | GLY119 |
D | ASP121 |
D | HOH252 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 189 |
Chain | Residue |
B | TYR31 |
B | GLU43 |
B | LYS44 |
B | ARG113 |
B | PRO129 |
B | HOH354 |
B | HOH545 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 190 |
Chain | Residue |
B | PRO39 |
B | LEU40 |
B | HOH401 |
C | ARG94 |
C | GLY156 |
C | LEU157 |
C | ILE158 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL B 191 |
Chain | Residue |
B | SER57 |
B | ILE59 |
B | HOH289 |
C | ARG154 |
C | HOH190 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL C 171 |
Chain | Residue |
B | ASP17 |
B | HOH248 |
C | SER82 |
C | LEU83 |
C | ASP84 |
C | SER123 |
C | HOH211 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL D 187 |
Chain | Residue |
D | ALA134 |
D | PRO135 |
D | ARG163 |
D | HOH194 |
D | HOH360 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL D 188 |
Chain | Residue |
B | ARG94 |
B | ASP121 |
B | HOH353 |
D | VAL150 |
D | GLU151 |
D | ARG154 |
D | HOH217 |
D | HOH452 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL D 189 |
Chain | Residue |
D | TYR31 |
D | TYR35 |
D | PRO45 |
D | PRO129 |
D | GLY130 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL D 190 |
Chain | Residue |
A | ARG154 |
A | HOH198 |
D | SER57 |
D | ILE59 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_01833 |
Chain | Residue | Details |
B | TYR125 | |
B | ALA133 | |
B | LYS164 | |
D | TYR125 | |
D | ALA133 | |
D | LYS164 |