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3AGO

Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0004540molecular_functionRNA nuclease activity
A0016829molecular_functionlyase activity
A0033899molecular_functionribonuclease U2 activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 3AM A 115
ChainResidue
ATYR39
AHIS101
AASP108
APHE110
AHOH149
AHOH159
AHOH162
AHOH189
AHIS41
AGLN42
ATYR43
ATYR44
AGLU46
AGLU49
AGLU62
AARG85

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 116
ChainResidue
AASP29
AALA31
AASN32
AASN38
ATYR39

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 117
ChainResidue
AASP45
AILE51
AHOH141
AHOH215
AHOH216
AHOH220

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 118
ChainResidue
AARG35
AASN38
ATYR39
ATYR71
ASER73

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000269|Ref.5
ChainResidueDetails
AHIS41

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000269|Ref.5
ChainResidueDetails
AGLU62

site_idSWS_FT_FI3
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000269|Ref.5
ChainResidueDetails
AHIS101

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:20858208
ChainResidueDetails
AASP29
AVAL30
AALA31
AASN32
AASP37
ATYR39

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AARG85
AASP108

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Methylation inactivates enzyme => ECO:0000269|PubMed:7492561
ChainResidueDetails
AGLU62

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 908
ChainResidueDetails
AHIS41proton shuttle (general acid/base)
AGLU62proton shuttle (general acid/base)
AARG85electrostatic stabiliser
AHIS101proton shuttle (general acid/base)

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PDB entries from 2024-07-10

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