3AEM
Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing Michaelis complex and methionine imine-pyridoxamine-5'-phosphate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0016829 | molecular_function | lyase activity |
A | 0016846 | molecular_function | carbon-sulfur lyase activity |
A | 0018826 | molecular_function | methionine gamma-lyase activity |
A | 0019346 | biological_process | transsulfuration |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0016829 | molecular_function | lyase activity |
B | 0016846 | molecular_function | carbon-sulfur lyase activity |
B | 0018826 | molecular_function | methionine gamma-lyase activity |
B | 0019346 | biological_process | transsulfuration |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0016829 | molecular_function | lyase activity |
C | 0016846 | molecular_function | carbon-sulfur lyase activity |
C | 0018826 | molecular_function | methionine gamma-lyase activity |
C | 0019346 | biological_process | transsulfuration |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0016829 | molecular_function | lyase activity |
D | 0016846 | molecular_function | carbon-sulfur lyase activity |
D | 0018826 | molecular_function | methionine gamma-lyase activity |
D | 0019346 | biological_process | transsulfuration |
D | 0030170 | molecular_function | pyridoxal phosphate binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE 2LM A 2001 |
Chain | Residue |
A | SER82 |
A | SER202 |
A | SER204 |
A | LYS205 |
A | GLY215 |
A | VAL331 |
A | SER332 |
A | THR347 |
A | ARG367 |
A | HOH3345 |
D | TYR1553 |
A | GLY83 |
D | ARG1555 |
A | MET84 |
A | ILE87 |
A | TYR108 |
A | GLU151 |
A | ASN155 |
A | ASP180 |
A | THR182 |
site_id | AC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 2LM B 2002 |
Chain | Residue |
B | SER582 |
B | GLY583 |
B | MET584 |
B | ILE587 |
B | TYR608 |
B | GLU651 |
B | ASN655 |
B | ASP680 |
B | THR682 |
B | SER702 |
B | SER704 |
B | LYS705 |
B | VAL831 |
B | SER832 |
B | THR847 |
B | ARG867 |
C | TYR1053 |
C | ARG1055 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MET C 2003 |
Chain | Residue |
C | TYR1108 |
C | ASN1155 |
C | LLP1205 |
C | SER1332 |
C | THR1347 |
C | ARG1367 |
site_id | AC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE 2LM D 2004 |
Chain | Residue |
A | TYR53 |
A | ARG55 |
D | SER1582 |
D | GLY1583 |
D | MET1584 |
D | ILE1587 |
D | TYR1608 |
D | ASN1655 |
D | ASP1680 |
D | THR1682 |
D | SER1702 |
D | SER1704 |
D | LYS1705 |
D | VAL1831 |
D | SER1832 |
D | THR1847 |
D | ARG1867 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE SO4 A 2005 |
Chain | Residue |
A | ARG176 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE SO4 B 2006 |
Chain | Residue |
B | ARG676 |
site_id | AC7 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE SO4 C 2007 |
Chain | Residue |
C | ARG1176 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 D 2008 |
Chain | Residue |
D | ARG1676 |
D | HOH3505 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL A 2009 |
Chain | Residue |
A | HOH3147 |
A | HOH3228 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 2010 |
Chain | Residue |
C | LYS1312 |
C | HOH3137 |
C | HOH3713 |