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3A4T

Crystal structure of aTrm4 from M.jannaschii with sinefungin

Functional Information from GO Data
ChainGOidnamespacecontents
A0001510biological_processRNA methylation
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006396biological_processRNA processing
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008173molecular_functionRNA methyltransferase activity
A0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
A0016428molecular_functiontRNA (cytidine-5-)-methyltransferase activity
A0016740molecular_functiontransferase activity
A0030488biological_processtRNA methylation
A0032259biological_processmethylation
B0001510biological_processRNA methylation
B0003723molecular_functionRNA binding
B0005737cellular_componentcytoplasm
B0006396biological_processRNA processing
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008173molecular_functionRNA methyltransferase activity
B0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
B0016428molecular_functiontRNA (cytidine-5-)-methyltransferase activity
B0016740molecular_functiontransferase activity
B0030488biological_processtRNA methylation
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE SFG A 500
ChainResidue
AMET90
AILE116
AARG120
AALA141
AASP142
AMET143
AASP163
APRO165
AASN169
AARG189
AHOH295
ACYS91
AALA92
AALA93
APRO94
AGLY95
AGLY96
ALYS97
AGLU115

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SFG B 501
ChainResidue
BMET90
BCYS91
BALA92
BALA93
BPRO94
BGLY95
BGLY96
BLYS97
BGLU115
BILE116
BARG120
BASP142
BMET143
BASP163
BPRO165
BARG189
BHOH290

Functional Information from PROSITE/UniProt
site_idPS01153
Number of Residues12
DetailsNOL1_NOP2_SUN NOL1/NOP2/sun family signature. FDKILlDAPCSG
ChainResidueDetails
APHE157-GLY168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000305
ChainResidueDetails
ACYS212
BCYS212

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
ACYS91
BARG120
BASP142
BASP163
BASN169
BARG189
AGLU115
AARG120
AASP142
AASP163
AASN169
AARG189
BCYS91
BGLU115

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PDB entries from 2025-06-18

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