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2ZZS

Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633

Functional Information from GO Data
ChainGOidnamespacecontents
10005506molecular_functioniron ion binding
10009055molecular_functionelectron transfer activity
10020037molecular_functionheme binding
20005506molecular_functioniron ion binding
20009055molecular_functionelectron transfer activity
20020037molecular_functionheme binding
30005506molecular_functioniron ion binding
30009055molecular_functionelectron transfer activity
30020037molecular_functionheme binding
40005506molecular_functioniron ion binding
40009055molecular_functionelectron transfer activity
40020037molecular_functionheme binding
50005506molecular_functioniron ion binding
50009055molecular_functionelectron transfer activity
50020037molecular_functionheme binding
60005506molecular_functioniron ion binding
60009055molecular_functionelectron transfer activity
60020037molecular_functionheme binding
A0005506molecular_functioniron ion binding
A0009055molecular_functionelectron transfer activity
A0020037molecular_functionheme binding
B0005506molecular_functioniron ion binding
B0009055molecular_functionelectron transfer activity
B0020037molecular_functionheme binding
C0005506molecular_functioniron ion binding
C0009055molecular_functionelectron transfer activity
C0020037molecular_functionheme binding
D0005506molecular_functioniron ion binding
D0009055molecular_functionelectron transfer activity
D0020037molecular_functionheme binding
E0005506molecular_functioniron ion binding
E0009055molecular_functionelectron transfer activity
E0020037molecular_functionheme binding
F0005506molecular_functioniron ion binding
F0009055molecular_functionelectron transfer activity
F0020037molecular_functionheme binding
G0005506molecular_functioniron ion binding
G0009055molecular_functionelectron transfer activity
G0020037molecular_functionheme binding
H0005506molecular_functioniron ion binding
H0009055molecular_functionelectron transfer activity
H0020037molecular_functionheme binding
I0005506molecular_functioniron ion binding
I0009055molecular_functionelectron transfer activity
I0020037molecular_functionheme binding
J0005506molecular_functioniron ion binding
J0009055molecular_functionelectron transfer activity
J0020037molecular_functionheme binding
K0005506molecular_functioniron ion binding
K0009055molecular_functionelectron transfer activity
K0020037molecular_functionheme binding
L0005506molecular_functioniron ion binding
L0009055molecular_functionelectron transfer activity
L0020037molecular_functionheme binding
M0005506molecular_functioniron ion binding
M0009055molecular_functionelectron transfer activity
M0020037molecular_functionheme binding
N0005506molecular_functioniron ion binding
N0009055molecular_functionelectron transfer activity
N0020037molecular_functionheme binding
O0005506molecular_functioniron ion binding
O0009055molecular_functionelectron transfer activity
O0020037molecular_functionheme binding
P0005506molecular_functioniron ion binding
P0009055molecular_functionelectron transfer activity
P0020037molecular_functionheme binding
Q0005506molecular_functioniron ion binding
Q0009055molecular_functionelectron transfer activity
Q0020037molecular_functionheme binding
R0005506molecular_functioniron ion binding
R0009055molecular_functionelectron transfer activity
R0020037molecular_functionheme binding
S0005506molecular_functioniron ion binding
S0009055molecular_functionelectron transfer activity
S0020037molecular_functionheme binding
T0005506molecular_functioniron ion binding
T0009055molecular_functionelectron transfer activity
T0020037molecular_functionheme binding
U0005506molecular_functioniron ion binding
U0009055molecular_functionelectron transfer activity
U0020037molecular_functionheme binding
V0005506molecular_functioniron ion binding
V0009055molecular_functionelectron transfer activity
V0020037molecular_functionheme binding
W0005506molecular_functioniron ion binding
W0009055molecular_functionelectron transfer activity
W0020037molecular_functionheme binding
X0005506molecular_functioniron ion binding
X0009055molecular_functionelectron transfer activity
X0020037molecular_functionheme binding
Y0005506molecular_functioniron ion binding
Y0009055molecular_functionelectron transfer activity
Y0020037molecular_functionheme binding
Z0005506molecular_functioniron ion binding
Z0009055molecular_functionelectron transfer activity
Z0020037molecular_functionheme binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC A 220
ChainResidue
AVAL33
ATYR67
AARG72
ALEU76
AMET80
AGLN83
AHOH104
AHOH105
AHOH362
BTYR59
BARG72
ACYS34
BHEC220
TALA36
ACYS37
AHIS38
APRO50
ALEU52
ATYR59
ASER63
AILE64

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC B 220
ChainResidue
ATYR59
AARG72
AHEC220
BVAL33
BCYS34
BCYS37
BHIS38
BTYR59
BSER63
BILE64
BTYR67
BARG72
BVAL79
BMET80
BGLN83
BHOH104
BHOH106
BHOH278

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC C 220
ChainResidue
CVAL33
CCYS34
CCYS37
CHIS38
CTYR49
CPRO50
CLEU52
CTYR59
CSER63
CILE64
CTYR67
CARG72
CLEU76
CMET80
CGLN83
CLEU95
CHOH106
CHOH858
DTYR59
DARG72
DHOH119
DHEC220

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 104
ChainResidue
CASN51
CLYS53
CGLY54
CGLN55
CHOH1181
DASN51
DLYS53
DGLY54
DGLN55

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC D 220
ChainResidue
CTYR59
CARG72
CHEC220
CHOH601
DCYS34
DCYS37
DHIS38
DPRO50
DLEU52
DTYR59
DSER63
DTYR67
DARG72
DLEU76
DVAL79
DMET80
DHOH105
DHOH114
LHEC220

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC E 220
ChainResidue
ELEU76
EVAL79
EMET80
ELEU95
EHOH105
EHOH109
FTYR59
FARG72
FHOH111
FHEC220
OHEC220
EVAL33
ECYS34
ECYS37
EHIS38
EPRO50
ELEU52
ETYR59
EILE64
ETYR67
EARG72

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL E 104
ChainResidue
EASN51
ELYS53
EGLY54
EGLN55
EHOH403
FASN51
FLYS53
FGLY54
FGLN55

site_idAC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC F 220
ChainResidue
CILE46
ETYR59
EARG72
EHEC220
EHOH318
FVAL33
FCYS34
FCYS37
FHIS38
FTYR49
FPRO50
FLEU52
FTYR59
FSER63
FILE64
FTYR67
FARG72
FMET80
FGLN83
FHOH104
FHOH109

site_idAC9
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC G 220
ChainResidue
GVAL33
GCYS34
GCYS37
GHIS38
GPRO50
GLEU52
GTYR59
GSER63
GILE64
GTYR67
GARG72
GVAL79
GMET80
GGLN83
GLEU95
GHOH106
GHOH212
HTYR59
HARG72
HHOH104
HHEC220
YHEC220

site_idBC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC H 220
ChainResidue
GTYR59
GARG72
GHEC220
GHOH274
HVAL33
HCYS34
HCYS37
HHIS38
HTYR49
HPRO50
HLEU52
HTYR59
HILE64
HTYR67
HARG72
HLEU76
HMET80
HHOH105
HHOH125

site_idBC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC I 220
ChainResidue
IVAL33
ICYS34
ICYS37
IHIS38
IPRO50
ILEU52
ITYR59
ITYR67
IARG72
ILEU76
IVAL79
IMET80
IGLN83
IHOH107
IHOH347
JTYR59
JARG72
JHEC220
JHOH565

site_idBC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC J 220
ChainResidue
ITYR59
IARG72
IHEC220
JCYS34
JCYS37
JHIS38
JPRO50
JLEU52
JTYR59
JTYR67
JARG72
JVAL79
JMET80
JGLN83
JLEU95
JHOH105
JHOH245
JHOH1330

site_idBC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC K 220
ChainResidue
KVAL33
KCYS34
KCYS37
KHIS38
KPRO50
KLEU52
KTYR59
KSER63
KILE64
KTYR67
KARG72
KLEU76
KALA77
KVAL79
KMET80
KHOH105
KHOH798
LTYR59
LARG72
LHEC220
LHOH1300
ZTYR49

site_idBC5
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC L 220
ChainResidue
DHEC220
KTYR59
KARG72
KHOH218
KHEC220
LVAL33
LCYS34
LCYS37
LHIS38
LPRO50
LLEU52
LTYR59
LSER63
LILE64
LTYR67
LARG72
LLEU76
LVAL79
LMET80
LGLN83
LHOH105
LHOH732

site_idBC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC M 220
ChainResidue
BCYS37
MVAL33
MCYS34
MCYS37
MHIS38
MPRO50
MLEU52
MTYR59
MSER63
MILE64
MTYR67
MARG72
MVAL79
MMET80
MHOH200
MHOH380
MHOH983
NTYR59
NARG72
NHOH104
NHEC220

site_idBC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC N 220
ChainResidue
MTYR59
MARG72
MHEC220
MHOH520
NVAL33
NCYS34
NCYS37
NHIS38
NLEU52
NTYR59
NSER63
NILE64
NTYR67
NARG72
NLEU76
NVAL79
NMET80
NGLN83
NHOH106
NHOH722

site_idBC8
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC O 220
ChainResidue
EHEC220
OVAL33
OCYS34
OCYS37
OHIS38
OPRO50
OLEU52
OTYR59
OSER63
OILE64
OTYR67
OARG72
OVAL79
OMET80
OHOH106
OHOH109
OHOH292
PTYR59
PARG72
PHEC220

site_idBC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC P 220
ChainResidue
OTYR59
OARG72
OHOH113
OHEC220
PVAL33
PCYS34
PCYS37
PHIS38
PTYR49
PLEU52
PTYR59
PSER63
PILE64
PTYR67
PARG72
PLEU76
PVAL79
PMET80
PGLN83
PLEU95
PHOH107

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL P 104
ChainResidue
OASN51
OLYS53
OGLY54
OGLN55
PASN51
PLYS53
PGLY54
PGLN55

site_idCC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC Q 220
ChainResidue
QVAL33
QCYS34
QCYS37
QHIS38
QPRO50
QLEU52
QTYR59
QSER63
QILE64
QTYR67
QARG72
QVAL79
QMET80
QGLN83
QHOH104
QHOH216
RTYR59
RARG72
RHEC220
RHOH375
VHEC220

site_idCC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC R 220
ChainResidue
PCYS37
PTYR49
QTYR59
QARG72
QHEC220
RVAL33
RCYS34
RCYS37
RHIS38
RPRO50
RLEU52
RTYR59
RSER63
RILE64
RTYR67
RARG72
RLEU76
RVAL79
RMET80
RGLN83
RHOH106
RHOH168
RHOH615

site_idCC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL R 104
ChainResidue
RALA35
RALA36
RCYS37
RGLY39
RALA44
RTHR45
RILE46
RHOH1205

site_idCC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC S 220
ChainResidue
1HEC220
SVAL33
SCYS34
SCYS37
SHIS38
SPRO50
SLEU52
STYR59
SSER63
SILE64
STYR67
SARG72
SVAL79
SMET80
SGLN83
SHOH106
SHOH543
TTYR59
TARG72
THOH140
THEC220

site_idCC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC T 220
ChainResidue
ATYR49
STYR59
SARG72
SHOH105
SHEC220
TVAL33
TCYS34
TCYS37
THIS38
TTYR49
TPRO50
TTYR59
TSER63
TILE64
TTYR67
TARG72
TLEU76
TVAL79
TMET80
TGLN83
TLEU87
THOH107
THOH109

site_idCC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC U 220
ChainResidue
UVAL33
UCYS34
UCYS37
UHIS38
UTYR49
UTYR59
USER63
UTYR67
UARG72
UMET80
UGLN83
ULEU87
ULEU95
UHOH104
UHOH342
VTYR59
VARG72
VHEC220
VHOH698

site_idCC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC V 220
ChainResidue
QHEC220
UTYR59
UARG72
UHEC220
VCYS34
VCYS37
VHIS38
VPRO50
VLEU52
VTYR59
VSER63
VILE64
VTYR67
VARG72
VLEU76
VVAL79
VMET80
VHOH105
VHOH412
VHOH925
VHOH1624

site_idCC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC W 220
ChainResidue
WVAL33
WCYS34
WCYS37
WHIS38
WLEU52
WTYR59
WSER63
WILE64
WTYR67
WARG72
WVAL79
WMET80
WGLN83
WHOH149
WHOH262
XTYR59
XARG72
XHEC220
XHOH428

site_idDC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC X 220
ChainResidue
4HEC220
WTYR59
WARG72
WHOH104
WHEC220
XVAL33
XCYS34
XCYS37
XHIS38
XPRO50
XLEU52
XTYR59
XSER63
XILE64
XTYR67
XARG72
XLEU76
XVAL79
XMET80
XLEU95
XHOH104
XHOH759

site_idDC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC Y 220
ChainResidue
GHEC220
YVAL33
YCYS34
YCYS37
YHIS38
YPRO50
YLEU52
YTYR59
YSER63
YILE64
YTYR67
YARG72
YLEU76
YALA77
YVAL79
YMET80
YHOH104
YHOH589
YHOH730
ZTYR59
ZARG72
ZHEC220

site_idDC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC Z 220
ChainResidue
KALA36
YTYR59
YARG72
YHEC220
YHOH436
YHOH594
ZCYS34
ZCYS37
ZHIS38
ZTYR49
ZLEU52
ZTYR59
ZSER63
ZILE64
ZTYR67
ZARG72
ZVAL79
ZMET80
ZGLN83
ZHOH104

site_idDC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC 1 220
ChainResidue
1VAL33
1CYS34
1CYS37
1HIS38
1TYR49
1PRO50
1LEU52
1TYR59
1SER63
1ILE64
1TYR67
1ARG72
1LEU76
1VAL79
1MET80
1HOH299
1HOH838
2TYR59
2ARG72
2HEC220
2HOH780
SHEC220

site_idDC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC 2 220
ChainResidue
1TYR59
1ARG72
1HEC220
1HOH1573
2VAL33
2CYS34
2CYS37
2HIS38
2TYR49
2LEU52
2TYR59
2SER63
2ILE64
2TYR67
2ARG72
2LEU76
2VAL79
2MET80

site_idDC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC 3 220
ChainResidue
3VAL33
3CYS34
3CYS37
3HIS38
3LEU52
3TYR59
3SER63
3ILE64
3TYR67
3ARG72
3ALA77
3MET80
3GLN83
3LEU87
3LEU95
3HOH276
3HOH1340
4TYR59
4ARG72
4HEC220

site_idDC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC 4 220
ChainResidue
3TYR59
3ARG72
3HEC220
3HOH848
4CYS34
4CYS37
4HIS38
4PRO50
4LEU52
4TYR59
4SER63
4TYR67
4ARG72
4MET80
4GLN83
4HOH129
4HOH677
XCYS37
XHEC220

site_idDC8
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC 5 220
ChainResidue
5VAL33
5CYS34
5ALA36
5CYS37
5HIS38
5GLY48
5TYR49
5LEU52
5TYR59
5SER63
5ILE64
5TYR67
5LEU76
5ALA77
5VAL79
5MET80
5GLN83
5LEU95
6TYR59
6HEC220

site_idDC9
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC 6 220
ChainResidue
5TYR59
5ARG72
5HEC220
6VAL33
6CYS34
6CYS37
6HIS38
6TYR49
6PRO50
6LEU52
6TYR59
6ILE60
6ILE64
6TYR67
6LEU76
6ALA77
6VAL79
6MET80
6GLN83
6LEU95
6TYR99
6HOH104
NTYR49

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PDB entries from 2024-07-24

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