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2ZZ1

Snapshot of the reaction from 6-CN-UMP to BMP catalyzed by Orotidine Monophosphate Deacarboxylase from M. thermoautotrophicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE BMP A 301
ChainResidue
AASP20
AARG203
AHOH402
AHOH403
AHOH406
AHOH407
AHOH408
AHOH411
AHOH461
BASP75
BILE76
ALYS42
BTHR79
AASP70
ALYS72
AMET126
ASER127
APRO180
AGLN185
AGLY202

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 6CN A 303
ChainResidue
AASP20
ALYS42
AASP70
ALYS72
AILE96
AMET126
ASER127
APRO180
AGLN185
AGLY202
AARG203
AHOH402
AHOH403
AHOH406
AHOH407
AHOH408
AHOH411
AHOH461
BASP75
BILE76
BTHR79

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 311
ChainResidue
AGLU33
AASN210
AHOH522
AHOH528
AHOH717
BTHR159
BPRO161
BGLY186

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 312
ChainResidue
ATHR159
APRO161
AGLY186
BASN210
BHOH519
BHOH530

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 314
ChainResidue
AALA208
AASP209
AASN210
AALA213
AALA214
AHOH565
BGLU162

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE BMP B 302
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH422
BHOH423
BHOH426
BHOH427
BHOH428
BHOH431
BHOH462

site_idAC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 6CN B 304
ChainResidue
BHOH427
BHOH428
BHOH431
BHOH462
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BILE96
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH422
BHOH423
BHOH426

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 313
ChainResidue
AGLU162
BALA208
BASP209
BASN210
BALA213
BALA214

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS72
AASP70

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BLYS72
BASP70

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS42
AASP75
ALYS72
AASP70

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BLYS42
BASP75
BLYS72
BASP70

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PDB entries from 2025-06-18

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