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2ZW9

Crystal structure of tRNA wybutosine synthesizing enzyme TYW4

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008175molecular_functiontRNA methyltransferase activity
A0016740molecular_functiontransferase activity
A0030488biological_processtRNA methylation
A0031591biological_processwybutosine biosynthetic process
A0032259biological_processmethylation
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008175molecular_functiontRNA methyltransferase activity
B0016740molecular_functiontransferase activity
B0030488biological_processtRNA methylation
B0031591biological_processwybutosine biosynthetic process
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE SAM A 801
ChainResidue
AILE27
AASP146
ATYR147
ALEU150
ACYS195
AASP196
ALEU197
AASN198
AGLU224
AVAL225
ASER226
ATHR30
ATYR229
AHOH711
AASN31
ASER34
ALYS38
AARG88
AGLY115
ACYS116
AGLY117

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE SAM B 801
ChainResidue
BILE27
BGLN28
BTHR30
BASN31
BSER34
BLYS38
BARG88
BGLY115
BCYS116
BGLY117
BASP146
BTYR147
BLEU150
BCYS195
BASP196
BLEU197
BASN198
BGLU224
BVAL225
BSER226

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor; for both methylation and methoxycarbonylation activities => ECO:0000269|PubMed:19287006
ChainResidueDetails
AARG88
BARG88

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor; for methoxycarbonylation activity => ECO:0000305|PubMed:19287006
ChainResidueDetails
ATYR229
BTYR229

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING:
ChainResidueDetails
ALYS38
BASP146
BASP196
BGLU224
AARG88
AGLY115
AASP146
AASP196
AGLU224
BLYS38
BARG88
BGLY115

218853

PDB entries from 2024-04-24

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