2ZR2
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with ATP
Replaces: 2DQ1Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0004828 | molecular_function | serine-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006412 | biological_process | translation |
A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
A | 0006434 | biological_process | seryl-tRNA aminoacylation |
A | 0016260 | biological_process | selenocysteine biosynthetic process |
B | 0000049 | molecular_function | tRNA binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
B | 0004828 | molecular_function | serine-tRNA ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006412 | biological_process | translation |
B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
B | 0006434 | biological_process | seryl-tRNA aminoacylation |
B | 0016260 | biological_process | selenocysteine biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE AMP A1001 |
Chain | Residue |
A | ARG283 |
A | SER373 |
A | THR406 |
A | ALA409 |
A | SER411 |
A | ARG412 |
A | GLU285 |
A | PHE297 |
A | ARG298 |
A | VAL299 |
A | PHE302 |
A | GLU370 |
A | VAL371 |
A | VAL372 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A2001 |
Chain | Residue |
A | SER183 |
A | ARG184 |
A | ALA289 |
A | HIS300 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A2003 |
Chain | Residue |
A | LYS291 |
A | ASP292 |
A | THR293 |
A | ARG298 |
A | ARG369 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A2005 |
Chain | Residue |
A | PHE297 |
A | ARG298 |
A | ARG369 |
A | GLU370 |
A | ARG412 |
A | HOH2011 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A2007 |
Chain | Residue |
A | ALA172 |
A | ASP173 |
A | PHE174 |
A | ALA175 |
site_id | AC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE AMP B1002 |
Chain | Residue |
B | ARG283 |
B | GLU285 |
B | PHE297 |
B | ARG298 |
B | VAL299 |
B | PHE302 |
B | GLU370 |
B | VAL371 |
B | VAL372 |
B | THR406 |
B | ALA409 |
B | SER411 |
B | ARG412 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B2002 |
Chain | Residue |
B | SER183 |
B | ARG184 |
B | ALA289 |
B | HIS300 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B2004 |
Chain | Residue |
B | LYS291 |
B | ASP292 |
B | THR293 |
B | ARG298 |
B | ARG369 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B2006 |
Chain | Residue |
B | PHE297 |
B | ARG298 |
B | ARG369 |
B | GLU370 |
B | ARG412 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00176 |
Chain | Residue | Details |
A | THR252 | |
B | GLU306 | |
B | GLU370 | |
B | THR406 | |
A | ARG283 | |
A | VAL299 | |
A | GLU306 | |
A | GLU370 | |
A | THR406 | |
B | THR252 | |
B | ARG283 | |
B | VAL299 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1ses |
Chain | Residue | Details |
A | ASP292 | |
A | ARG298 | |
A | GLU285 | |
A | ARG283 | |
A | THR288 |
site_id | CSA2 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1ses |
Chain | Residue | Details |
B | ASP292 | |
B | ARG298 | |
B | GLU285 | |
B | ARG283 | |
B | THR288 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1ses |
Chain | Residue | Details |
A | ARG283 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1ses |
Chain | Residue | Details |
B | ARG283 |