2YY5
Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0004830 | molecular_function | tryptophan-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006412 | biological_process | translation |
A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
A | 0006436 | biological_process | tryptophanyl-tRNA aminoacylation |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
B | 0004830 | molecular_function | tryptophan-tRNA ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006412 | biological_process | translation |
B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
B | 0006436 | biological_process | tryptophanyl-tRNA aminoacylation |
C | 0000166 | molecular_function | nucleotide binding |
C | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
C | 0004830 | molecular_function | tryptophan-tRNA ligase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0006412 | biological_process | translation |
C | 0006418 | biological_process | tRNA aminoacylation for protein translation |
C | 0006436 | biological_process | tryptophanyl-tRNA aminoacylation |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
D | 0004830 | molecular_function | tryptophan-tRNA ligase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0006412 | biological_process | translation |
D | 0006418 | biological_process | tRNA aminoacylation for protein translation |
D | 0006436 | biological_process | tryptophanyl-tRNA aminoacylation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 B 1360 |
Chain | Residue |
B | HIS16 |
B | ASN19 |
B | LYS200 |
B | SER202 |
B | LYS203 |
B | HOH1411 |
B | HOH1471 |
site_id | AC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 1361 |
Chain | Residue |
B | TYR133 |
B | GLN155 |
B | HIS158 |
B | HOH1368 |
B | HOH1471 |
B | HOH1474 |
B | GLN108 |
B | LYS112 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 1362 |
Chain | Residue |
A | HIS16 |
A | ASN19 |
A | LYS200 |
A | SER202 |
A | LYS203 |
A | HOH1410 |
A | HOH1482 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 1363 |
Chain | Residue |
A | GLN108 |
A | TYR133 |
A | GLN155 |
A | HIS158 |
A | HOH1368 |
A | HOH1482 |
A | HOH1483 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 1364 |
Chain | Residue |
D | HIS16 |
D | ASN19 |
D | LYS200 |
D | SER202 |
D | LYS203 |
D | HOH1480 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 D 1365 |
Chain | Residue |
D | GLN10 |
D | GLN108 |
D | LYS112 |
D | TYR133 |
D | GLN155 |
D | HIS158 |
D | HOH1419 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 C 1366 |
Chain | Residue |
C | GLN108 |
C | TYR133 |
C | GLN155 |
C | HIS158 |
C | HOH1426 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 C 1367 |
Chain | Residue |
C | HIS16 |
C | ASN19 |
C | LYS200 |
C | SER202 |
C | LYS203 |
C | HOH1412 |
site_id | AC9 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE WSA A 1350 |
Chain | Residue |
A | GLY8 |
A | GLN10 |
A | HIS16 |
A | GLY18 |
A | ASN19 |
A | GLY22 |
A | PHE39 |
A | HIS44 |
A | MET137 |
A | ASP140 |
A | GLY152 |
A | ASP154 |
A | GLN155 |
A | THR188 |
A | ASN189 |
A | ARG190 |
A | ILE191 |
A | LYS200 |
A | MET201 |
A | LYS203 |
A | HOH1468 |
A | HOH1482 |
site_id | BC1 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE WSA B 1351 |
Chain | Residue |
B | THR7 |
B | GLY8 |
B | GLN10 |
B | HIS16 |
B | GLY18 |
B | ASN19 |
B | GLY22 |
B | HIS44 |
B | MET137 |
B | ASP140 |
B | GLY152 |
B | ASP154 |
B | GLN155 |
B | THR188 |
B | ASN189 |
B | ARG190 |
B | ILE191 |
B | LYS200 |
B | MET201 |
B | LYS203 |
B | HOH1368 |
B | HOH1400 |
B | HOH1420 |
B | HOH1471 |
site_id | BC2 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE WSA C 1352 |
Chain | Residue |
C | GLY8 |
C | GLN10 |
C | HIS16 |
C | GLY18 |
C | ASN19 |
C | GLY22 |
C | PHE39 |
C | HIS44 |
C | MET137 |
C | ASP140 |
C | ILE141 |
C | GLY152 |
C | ASP154 |
C | GLN155 |
C | THR188 |
C | ASN189 |
C | ARG190 |
C | ILE191 |
C | LYS200 |
C | MET201 |
C | LYS203 |
C | HOH1369 |
C | HOH1419 |
site_id | BC3 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE WSA D 1353 |
Chain | Residue |
D | THR7 |
D | GLY8 |
D | GLN10 |
D | HIS16 |
D | GLY18 |
D | ASN19 |
D | GLY22 |
D | HIS44 |
D | MET137 |
D | ASP140 |
D | GLY152 |
D | ASP154 |
D | GLN155 |
D | THR188 |
D | ASN189 |
D | ARG190 |
D | ILE191 |
D | LYS200 |
D | MET201 |
D | LYS203 |
D | HOH1373 |
D | HOH1415 |
D | HOH1420 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00140 |
Chain | Residue | Details |
A | GLN10 | |
B | GLY152 | |
B | ILE191 | |
B | LYS200 | |
C | GLN10 | |
C | GLY18 | |
C | ASP140 | |
C | GLY152 | |
C | ILE191 | |
C | LYS200 | |
D | GLN10 | |
A | GLY18 | |
D | GLY18 | |
D | ASP140 | |
D | GLY152 | |
D | ILE191 | |
D | LYS200 | |
A | ASP140 | |
A | GLY152 | |
A | ILE191 | |
A | LYS200 | |
B | GLN10 | |
B | GLY18 | |
B | ASP140 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1d2r |
Chain | Residue | Details |
A | LYS200 | |
A | LYS203 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1d2r |
Chain | Residue | Details |
B | LYS200 | |
B | LYS203 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1d2r |
Chain | Residue | Details |
C | LYS200 | |
C | LYS203 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1d2r |
Chain | Residue | Details |
D | LYS200 | |
D | LYS203 |